Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1645 107 3e-19 seq3993 102 1e-17 seq2512 102 1e-17 >seq1645 Length=110380 Score = 107 bits (118), Expect = 3e-19 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||||||||| || || |||||||| ||||||||| |||| || | ||||||| Sbjct 107378 GCTATCCGTCGTCTTGCCCGCCGTGGTGGTGTCAAGCGTATCTCGGGTCTTATCTATGAG 107437 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 |||| |||| |||| | |||||||||||| ||| ||||| | || || || || Sbjct 107438 GAGACCCGTGGTGTTCTCAAGATCTTCCTCGAGAATGTTATTCGCGACTCTGTCACGTAC 107497 Query 16607 ACCGAGCACGCTAA 16620 ||||||||||| || Sbjct 107498 ACCGAGCACGCGAA 107511 >seq3993 Length=67826 Score = 102 bits (112), Expect = 1e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| |||||||| ||||| || ||||||||||| ||||||||| |||| Sbjct 64477 AGGTATCACGAAGCCCGCTATCCGCCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTC 64536 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 ||| | | || || |||| |||| ||| ||||||||||||| ||| ||| Sbjct 64537 TGGCCTCATTTACGAGGAGACGCGTGGTGTCCTGAAGATCTTCCTTGAGAACGT 64590 >seq2512 Length=122807 Score = 102 bits (112), Expect = 1e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||||||||| || ||||||||||| || |||||||| || ||||||||| |||| Sbjct 5275 AGGTATCACCAAGCCCGCCATCCGTCGTCTTGCCCGTCGTGGGGGTGTCAAGCGTATCTC 5216 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 ||| | | || || |||| |||| |||| | ||||| |||||| ||| ||| Sbjct 5215 TGGCCTCATTTACGAGGAGACGCGTGGTGTTCTCAAGATTTTCCTCGAGAACGT 5162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070334972453