Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3662 134 2e-26 >seq3662 Length=107388 Score = 134 bits (148), Expect = 2e-26 Identities = 242/353 (69%), Gaps = 3/353 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 ||||| || ||| ||||| ||||||||||| || ||||| |||||||| ||||| Sbjct 75615 CATGCAAAGTCGGTGTGCATACCCTCGTCTCGTGAGATCAGTTCATTGGAAAAGGTGAGG 75674 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| | ||||||||| || ||||| ||||||| ||||| || || ||||||||| Sbjct 75675 CCGGGCATCAAGCCACGCTTCTTGAGCCAGAATATGGCGGCGAACGACCCGGAAAAGAAG 75734 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGT 33480 || || || || || || || || | ||| | |||| | | ||| || ||| Sbjct 75735 ATGCCCTCCACAGCGGCGAACGCTACAAGACGCTCTGCGAACACGGAGCGTTCGTCCGCG 75794 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| | ||||| || |||||||| || | || |||| || || ||||| | Sbjct 75795 ATCCAGCGGAGGGCCCAGTCCGCCTTCTTCTTGATGCACGGCACGGTGTCGATGGCGTCG 75854 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| | ||| | ||||| | || || ||||| | || ||| | Sbjct 75855 AAGAGGAACGCGCGCTCAGTGGGGTCTTTGATGTACGTGTCGATGAGGAGGGAGTACGTC 75914 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 |||||||| | ||| || || ||||| || |||||||| || | ||||| Sbjct 75915 TCCGAATGCACGTTCTCGATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTC 75967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622905766224360