Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2306 143 2e-29 seq256 140 2e-28 seq3254 96.9 2e-15 seq595 96.9 2e-15 >seq2306 Length=115265 Score = 143 bits (158), Expect = 2e-29 Identities = 218/310 (70%), Gaps = 3/310 (1%) Strand=Plus/Plus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 ||||| |||| || ||||| ||||| || || || |||||| |||||| | || || | Sbjct 107701 CCAAGATCGAAGGCAAGGGCAACGGCATCAAGACTGTCATTCCGAACATGTCCGACGTGG 107760 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 | |||||| | ||||| |||| || || || || | ||||||||||| ||||||| Sbjct 107761 CCCGCGCGCTCAGCCGCCCGCCCACGTATCCCACCAAGTTCTTCGGGTGCGAGCTTGGCG 107820 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | |||||| ||| || | || ||||| || | ||| || ||||| |||| || | Sbjct 107821 CGCAGACGTCGTTCGACGAGAAGAACGACCGGTACATTGTCAACGGCGCGCACGACGCGA 107880 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 | ||||||| || | || ||||||||||| ||||| ||||| || || ||| Sbjct 107881 CGAAGCTGCGCGAGCTCCTCGACGGCTTTATCGAGAAGTTCGTGCTCTGCAAGGCGTGCA 107940 Query 6472 ATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCA 6531 | ||||||||||| || || || | ||||||| || |||| | | ||||| Sbjct 107941 AGAACCCGGAGACGGACCTGATCAT---CACCAAGACCGACGACATCATCCGTGACTGCA 107997 Query 6532 AAGCGTGCGG 6541 | |||||||| Sbjct 107998 AGGCGTGCGG 108007 >seq256 Length=8149 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5742 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5801 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 5802 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5836 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 8019 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 8078 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 8079 GCCAATATTTAGCTTTA 8095 >seq3254 Length=1458 Score = 96.9 bits (106), Expect = 2e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 19956 CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATT 20015 |||||| ||||||| |||||||||||||||||||||||||||||||||| || |||||| Sbjct 1 CAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCAATATT 60 Query 20016 TAGCCTTA 20023 |||| ||| Sbjct 61 TAGCTTTA 68 >seq595 Length=1461 Score = 96.9 bits (106), Expect = 2e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 19956 CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATT 20015 |||||| ||||||| |||||||||||||||||||||||||||||||||| || |||||| Sbjct 1461 CAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCAATATT 1402 Query 20016 TAGCCTTA 20023 |||| ||| Sbjct 1401 TAGCTTTA 1394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334925478778751