Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3662 159 4e-34 >seq3662 Length=107388 Score = 159 bits (176), Expect = 4e-34 Identities = 378/569 (66%), Gaps = 9/569 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || |||||||| || | || || || || ||||| | ||| ||| ||| || | Sbjct 78157 GCAGGCGAAGTCGGTGTGCATGCCCTCATCACGAGATATGAGCTCGTTGGAGAAGGTCAG 78098 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || || || ||||| | ||| || || || || || ||||| || || Sbjct 78097 GCCGGGCATCAAGCCACGCTTCTTCAACCAGAAGATAGAGGCGAAGGAGCCAGAGAAGAA 78038 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||||| || ||||| || || || || | ||| || ||||| || || | || Sbjct 78037 GATACCCTCGACGGCAGCGAAGGCAACGAGACGCTCAGCAAAC---GCAGACTCCTTGTC 77981 Query 93271 G---ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 | ||||| | | |||||| || || || ||||| ||||| || | || ||||| || Sbjct 77980 GGAGATCCAGTGAAGAGCCCAGTCCGCCTTCTTCTTGATACAGGGAATGGTATCGATGGC 77921 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || |||| || |||| | | ||| |||||||| ||||| | || ||||| Sbjct 77920 GTCGAAGAGGTGCTCGCGCTGGCGAGGATCCTTGATGTATGTGTCGATGAGAAGGGAATA 77861 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 | || || |||| |||||||| || ||||| |||||||| || | ||| || | Sbjct 77860 AGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGC 77801 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 ||| || || | || || | ||| ||||| || || ||||| ||||||||||| || Sbjct 77800 CGCCTGGACCTCATTCGAGAACCGCTCGACGAGGTTCTCGTTGACGATACCATCGGACGC 77741 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATC 93564 ||||| || || | | ||| || || || || || || || | | || | Sbjct 77740 AGCAAAGAACGCGAGAACGTGCGAGATGAAGTGACGTTCGTCGTCGTTCAGGCGGTTGTT 77681 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| ||| || || || || || || | || || | ||||| || || || || || Sbjct 77680 CCAGTCGTGGAGGTCCTTGGACAGGTCCATCTCCTCAGCCGTCCAGAAGGACGCCTCAGC 77621 Query 93625 TTTTTTGTACATATCCCATATGTCTTGAT 93653 || |||||||| | ||| || | |||| Sbjct 77620 CTTCTTGTACATCTGCCAAATCTGATGAT 77592 Score = 132 bits (146), Expect = 5e-26 Identities = 368/561 (66%), Gaps = 9/561 (2%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||| ||||||||||| |||| |||||| || || | Sbjct 75614 GCATGCAAAGTCGGTGTGCATACCCTCGTCTCGTGAGATCAGTTCATTGGAAAAGGTGAG 75673 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || || || ||||||||||| ||||| | || || || ||||| || Sbjct 75674 GCCGGGCATCAAGCCACGCTTCTTGAGCCAGAATATGGCGGCGAACGACCCGGAAAAGAA 75733 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA--ATTACTG 93268 || || ||||| || || || || |||| ||| || || || |||| || | Sbjct 75734 GATGCCCTCCACAGCGGCGAACGCTACAAGACGCTCTGCGAA---CACGGAGCGTTCGTC 75790 Query 93269 C-TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 | |||||| | ||||| || || || ||||| || || || | || ||||| || Sbjct 75791 CGCGATCCAGCGGAGGGCCCAGTCCGCCTTCTTCTTGATGCACGGCACGGTGTCGATGGC 75850 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || ||| | | ||||| | ||| ||||| || ||||| | || || || Sbjct 75851 GTCGAAGAGGAACGCGCGCTCAGTGGGGTCTTTGATGTACGTGTCGATGAGGAGGGAGTA 75910 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 | | || ||||| || ||||| || || ||||| |||||||| || | || || | Sbjct 75911 CGTCTCCGAATGCACGTTCTCGATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGC 75970 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 | || || || | ||| || | ||| ||||| || || || || || || || || || Sbjct 75971 GGCTTGGACCTCGTTAGAGAACCGCTCAACGAGGTTCTCGTTCACGATGCCGTCTGAGGC 76030 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT---ATC 93564 || || || || | | | || || || || | | || | ||| || Sbjct 76031 GGCGAAGAAGGCTAGCACGTAGGAGATGAAGTGCCGTTCGTTGGCATTTAACTTGCGGTC 76090 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| || || || | || || || | ||||| || ||||| || || |||| || Sbjct 76091 CCAGTCCATGAGGTCGTGCGAGAGGTCTATCTCTTCTACCGTCCAGAAGGACGCTTGAGC 76150 Query 93625 TTTTTTGTACATATCCCATAT 93645 ||||||||||| | |||||| Sbjct 76151 ATTTTTGTACATCTGCCATAT 76171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556823761796040