Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq633 134 1e-26 seq4520 132 4e-26 seq145 104 2e-17 >seq633 Length=42484 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || || ||||||| || || || | || Sbjct 35088 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 35029 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || |||||||||||||||||||| || || || Sbjct 35028 GACACTATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAG 34969 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||||| |||||| ||||||| |||||||||||||| Sbjct 34968 CAGCGCCTGATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGCACCCTCTCCGATTACAAC 34909 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||| | ||| Sbjct 34908 ATCCAGAAGGAGAGCACCCTCCAT 34885 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || || | Sbjct 35368 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCCTCG 35309 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || || |||||||| || || || ||||| || Sbjct 35308 GATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 35249 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | ||||| |||||| |||| ||||||||| Sbjct 35248 CAGCGTCTCATCTTCGCCGGGAAGCAGCTTGAGGACGGGCGCACCCTCTCGGATTACAAC 35189 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 35188 ATTCAGAAGGAGTCTACC 35171 >seq4520 Length=427429 Score = 132 bits (146), Expect = 4e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || ||||| || ||| |||| ||||| || || | || Sbjct 157709 ATGCAAATCTTCGTGAAGACGTTGACCGGCAAGACGATCACCCTTGAGGTCGAGTCGTCC 157768 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| ||| ||||| ||||||||||| ||||| || || || Sbjct 157769 GATACCATCGACAACGTCAAGGCAAAGATTCAGGACAAGGAGGGGATTCCCCCGGACCAG 157828 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||||||||| ||| | ||||| ||| || | |||||||||||| Sbjct 157829 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGGACGTTGTCCGATTACAAC 157888 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 157889 ATTCAGAAGGAGTCTACC 157906 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || || || |||| || || || || | || Sbjct 157991 ATGCAGATTTTCGTCAAGACGTTGACTGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 158050 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| ||| || ||||||||||||||||| || ||||| ||| Sbjct 158051 GACACGATCGACAACGTCAAGGCAAAGATCCAAGACAAGGAGGGTATCCCGCCCGACCAA 158110 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || |||||||| ||||| |||||| ||||| | || ||||||||| Sbjct 158111 CAGCGTCTTATCTTCGCCGGCAAGCAGTTGGAGGATGGTCGCACTCTTTCGGATTACAAC 158170 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || || || Sbjct 158171 ATCCAAAAGGAGTCGAC 158187 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| |||| || || || || | | Sbjct 157481 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCTTCA 157540 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || ||||||||||| || || ||||| || Sbjct 157541 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 157600 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||||||||| ||| | |||||| ||| ||| ||||||| |||||| Sbjct 157601 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAAC 157660 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || || | ||| | || |||| | || || ||| Sbjct 157661 ATCCAAAAGGAGTCGACTCTTCATCTTGTCCTGCGTCTCCGTGGTGGT 157708 >seq145 Length=336 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || ||| ||||||| || || || | | Sbjct 280 ATGCAGATCTTCGTCAAGACCTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCGTCG 221 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || ||||||||||| ||||| ||||| || Sbjct 220 GACACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 161 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||| ||| |||| ||||||||| Sbjct 160 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGTACCCTCTCGGATTACAAC 101 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 100 ATCCAGAAGGAGTCGAC 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419700780770365