Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2898 116 8e-21 seq2326 107 4e-18 seq3662 95.1 2e-14 seq4755 87.8 4e-12 >seq2898 Length=20848 Score = 116 bits (128), Expect = 8e-21 Identities = 140/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | || ||||| ||| | || ||||||||||| |||| |||| | ||||| | Sbjct 11393 GTCCTCGGTCCCAACGGTTCCGGCAAGTCTACCCTCGTCAAGCTCCTCATCGGCGATCTC 11334 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| |||| || | | |||||||| |||||| || || | ||||||||| Sbjct 11333 GAGCCCAACAAGGGTGGTGAGATCTGGAAGCACCCCAACCTGGTCATCGGTTACGTCGCA 11274 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| |||||||||||||| |||||||| |||| ||| || | ||||||| | Sbjct 11273 CAGCACGCGTTCCACCACATCGATAACCACCTCGACAAGACCCCGCTCGAATACATGTTG 11214 Query 280350 TGGCGCTA 280357 |||||||| Sbjct 11213 TGGCGCTA 11206 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || |||||||||||||||||||| || ||| | ||||| || || | || || || Sbjct 11864 CTTTCCGGTGGTTGGAAGATGAAGCTTGCGCTCGCCCGCGCGATGCTCTTCCGCGCTGAC 11805 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 |||| ||||| |||||||| ||||||||| |||| |||||| || ||||| | | Sbjct 11804 ATCCTCCTGCTCGATGAGCCCACCAACCACTTGGATGTTGTCAACGTCGCGTGGCTCGAG 11745 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| || || || | | | || |||| ||||| |||||||| |||||| Sbjct 11744 AACTACCTCACGAGCCTCACCACCTGCACGTCGATCATCGTCTCGCACGACTCCGGCTTC 11685 Query 279885 CT 279886 || Sbjct 11684 CT 11683 >seq2326 Length=152795 Score = 107 bits (118), Expect = 4e-18 Identities = 233/349 (67%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716 ||||||| || || ||||| || ||||| ||||| | |||||| ||||| || || Sbjct 27294 AGGTCGCACAACTTGTCGGTTACGTCTCCGAGATTTCAGCCTACCACCACGGCGAAGCGA 27235 Query 218717 GTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACT 218776 || || || | || | | |||| ||||||| || ||||| ||||||||||||| Sbjct 27234 GTTTGATGGCCACTATCATCAACTTGGCGCAGGACTTCGTCGGCAGCAACAACATGAACT 27175 Query 218777 TGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTG 218836 |||| | || ||||||||||| ||| | ||| ||||| ||||| || | | Sbjct 27174 TGCTCATGCCGAACGGTCAGTTCGGTACCCGTGATCAAGGTGGTAAGGACCACGCCGCGG 27115 Query 218837 CCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATG 218896 | | ||||||| || || || |||| || | || | || | ||| || || | Sbjct 27114 CTCGTTATATCTACACCGAGCTGGCGCCGGTCATCCGTAACGTCATGCATCCCGCGGACG 27055 Query 218897 ATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGC 218956 ||| |||| | ||||| | || ||||| ||| | ||||| |||||||| ||| Sbjct 27054 ATGCCATCCTCACGTATCAGCAAGATGATGGCAAGTCGGTCGAGCCAGAGTGGTACATGC 26995 Query 218957 CTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 | | || || | | || || || || ||| | ||||| || || || Sbjct 26994 CCGTCATCCCTCTCGTTCTGGTCAACGGCGCCGAAGGTATTGGCACTGG 26946 >seq3662 Length=107388 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||||| || ||||| | |||||||||||||||||||| ||| Sbjct 78474 TCAAAGAAGTTCGTCTTGCCCTGGAGCGAGATCATGTCCATGAAGTCGAAGGGGTTCGTG 78415 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| ||| || || |||| || || || ||||||||||| | Sbjct 78414 ACGTTGTAGTGCTTCTCGCCGCCGAGGGCCACGAGGAGACGATCCGCCACAAACTCGATG 78355 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || || | ||| || | | |||||| ||||| Sbjct 78354 TATTGGCGCATGAGCTTGGCGTTCATACCAAT 78323 Score = 93.3 bits (102), Expect = 9e-14 Identities = 346/537 (64%), Gaps = 9/537 (2%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| ||||| || ||| |||| ||||||||| | |||||| ||||||| || Sbjct 78142 GTGCATGCCCTCATCACGAGATATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAAGCC 78083 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| | | ||||||||| | | ||||| |||||||| | | ||||||||| Sbjct 78082 ACGCTTCTTCAACCAGAAGATAGAGGCGAAGGAGCCAGAGAAGAAGATACCCTCGACGGC 78023 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAAC---GACTTGTCCTGCGACAAGAACTTCTGTGC 252020 | | ||||| || |||||||||||| |||| | | || | | | | || Sbjct 78022 AGCGAAGGCAACGAGACGCTCAGCAAACGCAGACTCCTTGTCGGAGATCCAGTGAAGAGC 77963 Query 252021 CCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTC-C 252079 ||| | |||||||| | ||| || || ||||| || || ||||| | | || | Sbjct 77962 CCAGTCCGCCTTCTTCTTGATACAGGGAATGGTATCGATGGCGTCGAAGAG-GTGCTCGC 77904 Query 252080 GCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGG 252139 ||| | | |||| |||| | || | || || || || |||| || |||||| Sbjct 77903 GCTGGCGAGGATCCTTGATGTATGTGTCGATGAGAAGGGAATAAGTCTCGGAGTGGATGT 77844 Query 252140 ATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGG 252199 || | | |||||| | | ||||| ||| || | | ||| || | | Sbjct 77843 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGCCGCCTGGACCTCATTCG 77784 Query 252200 AAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAA 252259 | || | | | |||||| | || || |||||| | |||||||| | |||| Sbjct 77783 AGAACCGCTCGACGAGGTTCTCGTTGACGATACCATCGGACGCAGCAAAGAACGCGAGAA 77724 Query 252260 TGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCT 252319 | | |||||||||||| || |||||||| || || ||||||| | ||||| Sbjct 77723 CGTGCGAGATGAAGTGACGTTCGTCGTCGTTCAGGCGGTTGTTCCAGTCGTGGAGGTCCT 77664 Query 252320 GATTCAGAGGAACTTCT--TCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | | ||| | ||| || |||||||||| | | | | |||||||||||||| Sbjct 77663 --TGGACAGGTCCATCTCCTCAGCCGTCCAGAAGGACGCCTCAGCCTTCTTGTACAT 77609 >seq4755 Length=85889 Score = 87.8 bits (96), Expect = 4e-12 Identities = 169/242 (70%), Gaps = 12/242 (5%) Strand=Plus/Plus Query 293131 AAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTC 293190 || |||||||| || || |||||||| | || ||||| ||||||||||| ||| Sbjct 30236 AAAGCACCACGGTCGGCGGCGAGGTCGAGGACCTTCTTCTGGGAGATCTCCCAGACGGTC 30295 Query 293191 TTGTACACTGCCTTGACATC----AGGATGAATGCCAATAACCTTCTGGATAGACCCTCC 293246 ||||| | ||||||||||| ||||| ||| | || ||||||| || || Sbjct 30296 TTGTAGATGGCCTTGACATCGTCGGGGATG-ATGTCGAT---GTTCTGGACCGAGCCGTT 30351 Query 293247 GTTGGCAATAATCTGGTTCTTCATTGTC-TCGGACCA-AGTCCCACGAGCAATGAGCTCG 293304 ||||||||| ||| |||||||| |||| ||| ||| || |||| | | | |||||| Sbjct 30352 GTTGGCAATGATCATGTTCTTCA-TGTCATCGTTCCAGAGACCCA-GTTCGACGAGCTCA 30409 Query 293305 CGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATG 293364 |||| || | | |||||| ||||||| || || || || ||| |||| ||| Sbjct 30410 CGGAGCAGCCATGGACAGACAACCTGGAACTCTCCCGCAAGGACACGGCGGGTGTAGATG 30469 Query 293365 TT 293366 || Sbjct 30470 TT 30471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027766726904961