Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3662 293 4e-74 seq4755 176 9e-39 >seq3662 Length=107388 Score = 293 bits (324), Expect = 4e-74 Identities = 389/534 (73%), Gaps = 17/534 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || || |||||||| | ||||| Sbjct 76045 CTAGCCTTCTTCGCCGCCTCAGACGGCATCGTGAACGAGAACCTCGTTGAGCGGTTCTCT 75986 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| || | ||||| ||||||||||||||||||||||| || |||||| Sbjct 75985 AACGAGGTCCAAGCCGCAGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATCGAGAAC 75926 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 ||||| || ||| |||| || || || ||||||||||| || ||| ||||| Sbjct 75925 GTGCATTCGGAGACGTACTCCCTCCTCATCGACACGTACATCAAAGACCCCACTGAGCG- 75867 Query 42603 AACGGG---CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 || | || ||| | ||||| || || |||| |||||||||||||||||||||||| Sbjct 75866 --CGCGTTCCTCTTCGACGCCATCGACACCGTGCCGTGCATCAAGAAGAAGGCGGACTGG 75809 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACGCAAC--GTTCGGCGAGAGGCTGGTAGCCTTTA 42717 || ||| ||||||| | | | |||| | ||||| ||| | || ||||| || Sbjct 75808 GCCCTCCGCTGGATC--GCGGACGAACGCTCCGTGTTCGCAGAGCGTCTTGTAGCGTTCG 75751 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 |||| || |||||||||||||| || || | |||||| |||| |||||||||||| || Sbjct 75750 CCGCTGTGGAGGGCATCTTCTTTTCCGGGTCGTTCGCCGCCATATTCTGGCTCAAGAAGC 75691 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 | | ||||||||| |||||||| || || ||||| ||| | |||||||| ||| Sbjct 75690 GTGGCTTGATGCCCGGCCTCACCTTTTCCAATGAACTGATCTCACGAGACGAGGGTATGC 75631 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC--CCTCGAAGGA 42895 | | |||||||| |||||||| ||| ||||||| | | || | || | | Sbjct 75630 ACACCGACTTTGCATGCCTCCTATTC---CACCACCTCCGTCGTCGGCCACATCCCA--A 75576 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 ||| ||| | ||| ||||| || ||||| ||||| ||||||||||||||||| Sbjct 75575 ACGGATCCTGCGCATTATCACCGAAGCCGTAGAGATTGAGAAGGAGTTCCTCAC 75522 Score = 288 bits (318), Expect = 2e-72 Identities = 459/649 (71%), Gaps = 16/649 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || |||||||| |||||| |||||||| Sbjct 77609 ATGTACAAGAAGGCTGAGGCGTCCTTCTGGACGGCTGAGGAGATGGACCTGTCCAAGGAC 77668 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGA--AAAGTTT-TTCCTCAAAAACATACT 42424 || |||| | || | |||| |||| || || ||| || || | || Sbjct 77669 CTCCACGACTGGAACA-ACCGCCTGAACGACGACGAACGTCACTTCATCTCGCACGTTCT 77727 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 || ||||| || || || || || || ||||| |||||||| | | ||||| ||| Sbjct 77728 CGCGTTCTTTGCTGCGTCCGATGGTATCGTCAACGAGAACCTCGTCGAGCGGTTCTCGAA 77787 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||| ||| ||||| || |||||||||||||||||||| || |||||| | Sbjct 77788 TGAGGTCCAGGCGGCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACAT 77847 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||||| ||| || || || || |||| |||||| |||||| | |||| | Sbjct 77848 CCACTCCGAGACTTATTCCCTTCTCATCGACACATACATCAAGGATCCTCGCCAGCGCGA 77907 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 || ||| | ||||| || || || ||||| ||||||||||||||||||||||| || Sbjct 77908 GCACCTCTTCGACGCCATCGATACCATTCCCTGTATCAAGAAGAAGGCGGACTGGGCTCT 77967 Query 42665 CAACTGGAT---CGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 ||||||| ||| | || | |||| | ||| | || || ||||| | || Sbjct 77968 TCACTGGATCTCCGACA---AGGAGTCTGCGTTTGCTGAGCGTCTCGTTGCCTTCGCTGC 78024 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||||||||| ||||||||||| ||| |||||||||| ||||||||| | ||| || | Sbjct 78025 CGTCGAGGGTATCTTCTTCTCTGGCTCCTTCGCCTCTATCTTCTGGTTGAAGAAGCGTGG 78084 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 | ||||||||| || |||||||| ||||| ||||| | || ||||| |||| | Sbjct 78085 CTTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATATCTCGTGATGAGGGCATGCACAC 78144 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGCGGG 42900 ||||| ||||||||||||||| |||||||| | | | |||||| ||| | Sbjct 78145 CGACTTCGCCTGCCTCCTGTTC---AGCCACCTGAAG-AGGCGCCCTCACCCGGACATTG 78200 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 |||| |||||||| ||||| || ||||| ||| |||||||||| || Sbjct 78201 TCCGCCAGATCATCACAGAGGCGGTAGAGATTGAGCAGGAGTTCCTTAC 78249 >seq4755 Length=85889 Score = 176 bits (194), Expect = 9e-39 Identities = 337/496 (68%), Gaps = 22/496 (4%) Strand=Plus/Plus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 ||||| | ||| |||| ||| |||| | | |||||||| | ||| ||| ||| Sbjct 30678 CCCCAGAGGTCGTACTGGAGCTTGCCCTCGGAAGCAGGGCTGCCTTGGTACGTCTCATAG 30737 Query 244358 GGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCG 244417 | ||| |||| |||| || |||||| | |||| |||||||| |||||||||||| Sbjct 30738 GTGCCGAACTGCTGCGCCATCTCACAGCTGGCCTCGACGGCGGCGTGGTAGATGGTCTCA 30797 Query 244418 AAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATG 244477 |||||| | ||||| | ||| |||| | || |||||| |||| | |||| Sbjct 30798 AAGATCTGCAGGTTCAGCTTGCGCGCCTCAGGGGAGTCGAAGGGCATGCGGAGGGCCATG 30857 Query 244478 AAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 ||| |||||||||| |||||||| ||||| |||||||| | ||| ||| |||| || ||| Sbjct 30858 AAGGCGTCGGCCAGACCCTGCACACCGATACCGATGGGACGGTGGCGCATGTTTGAACGC 30917 Query 244538 ATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATC 244597 | || ||||| | || || ||||| ||||||| | ||| |||||| | || | Sbjct 30918 CTCGCCTCGGGGATCGGATAGTAGTTGACGTCGATGATGCGGTTCAGGTTGAACGCGACC 30977 Query 244598 A--TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGG 244655 | | || |||||| |||| ||| |||| ||||| | | |||| || || Sbjct 30978 ACCTTCG--TCACGTCGTGCAGCTTCTGGAAGTTGTACTTCCCG---TTCTCGATGAAGG 31032 Query 244656 TGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCG 244715 || ||| || | | ||||||||||||||| ||| ||| || | Sbjct 31033 --------AC-------GGGAGAGCAATGGAGGCCAGGTTGCAGACAGCCGTCTCATCGG 31077 Query 244716 AGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCT 244775 | | ||||| ||| ||||| ||||| ||||| ||||||| || || |||| || Sbjct 31078 GGGAAGAGTACTCGACGATCTCCGTGCACAGGTTGGAAGACTTGATAGTACCGAGGTTCT 31137 Query 244776 GGTGATTGGACTTGGC 244791 | ||||| |||||||| Sbjct 31138 GCTGATTCGACTTGGC 31153 Score = 111 bits (122), Expect = 3e-19 Identities = 273/407 (67%), Gaps = 18/407 (4%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTT 243795 ||| |||||| || || |||| |||||| || | ||||||||||||||||||||| Sbjct 30083 ACGGTGAACTTGATCGCCTGCG-CGGCGGGGCGTGTGCGCAGGTAGTACATGCCGGTCTT 30141 Query 243796 GAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGG 243855 ||| || | ||| ||| || ||||||| |||||| | | | | || || Sbjct 30142 GAGACCCTTCTTCCAACCGTAGAAGTGCATGCTCGTCAGTTGGCCCGTGGT-AG----GG 30196 Query 243856 GTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTC 243915 | ||| ||| || ||||||||| || |||| || ||| | | || || Sbjct 30197 G----CCTG---CAGGTGGACGTTGAGGGATTGAGACTGGCAGATGAAAGCACCACGGTC 30249 Query 243916 TGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 ||||| | | || || | |||||| || ||||| | | ||||||||||||| ||| Sbjct 30250 GGCGGCGAGGTCGAGGACCTTCTTCTGGGAGATCTCCCAGACGGTCTTGTAGATGGCCTT 30309 Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 || | ||||||| ||||||||||| |||||||| |||| | | |||| | | | Sbjct 30310 GACATCGTCGGGGATGATGTCGATGTTCTGGACCGAGCCGTTGTTGGCAATGATCATGTT 30369 Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTC-- 244093 ||||| ||||||||| || |||| | ||| | || ||| | || | Sbjct 30370 CTTCATGTCATCGTTCCAGAGACCCAGTTCGACGAGCTCACGGAGCAG--CCATGGACAG 30427 Query 244094 ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCT 244140 || ||||| |||||||||| || || ||||| ||||| |||||| Sbjct 30428 ACAACCTGGAACTCTCCCGCAAGGACACGGCGGGTGTAGATGTTGCT 30474 Score = 93.3 bits (102), Expect = 8e-14 Identities = 163/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074 || || ||||| ||||| || || | ||| || || | || | ||| ||| || Sbjct 31481 AAAAGATCGGGTATCCAAAGCGCATAGAATAGATCGCGGGCGCGAACCTCCTCCTTTCCG 31540 Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134 |||||| | || || | || || ||||||||| ||||||| ||||| | ||||| Sbjct 31541 TGGTTCTTGCGAAGGTCAATGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATG 31600 Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTT 245190 |||| |||||||| ||||||||||| ||||| || | | | ||||| || | Sbjct 31601 GCGAAAGCGCCGGGACGCTTGTTGCCACCCTGATCGA----CGTAACGAGCAGTAGCATC 31656 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTA 245247 | | | |||| |||| || |||||||| || | ||||||||| ||| ||||| Sbjct 31657 GTATACCCGCAACATAGGGACGATGCCGTTGGAATAGCCGTTGGTACCCGCAATGTA 31713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944276389638960