Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4520 87.8 1e-12 seq633 84.2 2e-11 >seq4520 Length=427429 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 33922 AGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCGTCCAAT 33981 || ||||| || ||||||||||||||||||||| | ||| || |||| || | Sbjct 157914 AGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGACAACGTCCGGCCGTCCTCAAGC 157855 Query 33982 TGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATAATT 34041 |||||||||||||| |||| ||||||||| ||| || | | ||| |||||| ||| Sbjct 157854 TGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGAATC 157795 Query 34042 TTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTTATTGTTTTTCCG 34101 ||| ||| | | | |||| | || ||| || | || || || || ||| Sbjct 157794 TTTGCCTTGACGTTGTCGATGGTATCGGACGACTCGACCTCAAGGGTGATCGTCTTGCCG 157735 Query 34102 GTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || ||||| ||||||||||| Sbjct 157734 GTCAACGTCTTCACGAAGATTTGCAT 157709 >seq633 Length=42484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/98 (80%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 33918 CACC-AGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCGT 33976 |||| ||||| || |||||||||||||| ||||||||||| | | || | || | Sbjct 34878 CACCGAGATGGAGGGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCT 34937 Query 33977 CCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| |||||||| ||||| |||||||||||||| ||| Sbjct 34938 CCAACTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCC 34975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397036650627442