Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq633 152 1e-31 seq4520 149 1e-30 seq145 118 3e-21 seq3662 104 6e-17 >seq633 Length=42484 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| ||||| |||| ||||| || || ||||| || ||||| | Sbjct 34526 CCACCACGGAGGCGAAGGACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 34585 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||| || ||||| || | ||| Sbjct 34586 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGG 34645 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | || || || || Sbjct 34646 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCAACC 34705 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||||||||| || || || ||||||||||| |||||||| Sbjct 34706 TCCAACGTGATCGTCTTGCCCGTGAGCGTCTTGACGAAGATCTGCAT 34752 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || || | ||| ||||| ||||| || | || || || |||||| Sbjct 35178 TCCTTCTGAATGTTGTAATCCGAGAGGGTGCGCCCGTCCTCAAGCTGCTTCCCGGCGAAG 35237 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||||| ||||| || |||||||| || || || ||||| Sbjct 35238 ATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 35297 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || ||||||||||| ||||| ||||| || ||||| ||| Sbjct 35298 TCGATGGTATCCGAGGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTCACG 35357 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 35358 AAGATCTGCAT 35368 >seq4520 Length=427429 Score = 149 bits (164), Expect = 1e-30 Identities = 150/194 (77%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||||||||| ||||| || || || ||||| |||||| Sbjct 158409 TCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAG 158350 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || ||||| ||| || ||| || || || ||||||||||| ||||| |||||| Sbjct 158349 ATAAGCCGCTGCTGA---TCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCACG 158293 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || || ||||||||||||||||| || || |||||| Sbjct 158292 TTGTCGATCGTGTCTGAGGACTCAACCTCTAGCGTGATCGTCTTCCCTGTGAGCGTCTTG 158233 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 158232 ACGAAAATCTGCAT 158219 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || ||||| |||| || || |||||||| || || | Sbjct 158221 CATG-CCACCGCGCAGGCGGAGGACGAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAAT 158163 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || || || || || || || |||||||| ||||||||||| Sbjct 158162 CCGAAAGAGTGCGACCATCCTCCAACTGCTTGCCGGCGAAGATAAGACGCTGTTGGTCGG 158103 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || || ||||| || || || ||||| || || | ||| || | Sbjct 158102 GCGGGATACCCTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGACT 158043 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 158042 CAACCTCGAGGGTGATGGTCTTGCCAGTCAACGTCTTGACGAAAATCTGCAT 157991 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||||| || || |||||||| || ||||||| | Sbjct 157707 CCACCACGGAGACGCAGGACAAGATGAAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAG 157648 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || ||||| ||||| || || ||| Sbjct 157647 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGAGGG 157588 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| ||||| || || || | || || || || Sbjct 157587 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAAGACTCGACC 157528 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||||||||| || || || |||||||| || |||||||| Sbjct 157527 TCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 157481 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || |||| | ||| || ||||| || | || || || || ||| Sbjct 157899 TCCTTCTGAATGTTGTAATCGGACAACGTCCGGCCGTCCTCAAGCTGCTTGCCGGCAAAG 157840 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || || ||| || || || || ||||| || || || || ||| Sbjct 157839 ATCAAGCGCTGCTGG---TCCGGGGGAATCCCCTCCTTGTCCTGAATCTTTGCCTTGACG 157783 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| ||| || || || || ||||||||||| ||||||| ||||| Sbjct 157782 TTGTCGATGGTATCGGACGACTCGACCTCAAGGGTGATCGTCTTGCCGGTCAACGTCTTC 157723 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 157722 ACGAAGATTTGCAT 157709 >seq145 Length=336 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || |||||||| | || || || || | ||| || || ||||| || || | Sbjct 50 CATG-CCGCCGCGGAGACGGAGGACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAAT 108 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| || || ||||| || | || || || |||||||| || ||||| || Sbjct 109 CCGAGAGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGG 168 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || |||||||| ||||| || || || || || | || ||| | Sbjct 169 GCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCCGACGACT 228 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| |||||||||||||| |||| ||||||||||| |||||||| Sbjct 229 CGACCTCGAGAGTGATCGTCTTCCCCGTCAAGGTCTTGACGAAGATCTGCAT 280 >seq3662 Length=107388 Score = 104 bits (114), Expect = 6e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 || |||||||| ||| | |||||| ||||| ||||| || ||||| |||||| || || Sbjct 78323 ATTGGTATGAACGCCAAGCTCATGCGCCAATACATCGAGTTTGTGGCGGATCGTCTCCTC 78382 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 ||| ||||| ||||| ||||| | ||| ||||||| ||| ||||| | Sbjct 78383 GTGGCCCTCGGCGGCGAGAAGCACTACAACGTCACGAACCCCTTCGACTTCATGGACATG 78442 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTA 269321 || |||||| | || |||||||||||||| || ||||| || |||||| Sbjct 78443 ATCTCGCTCCAGGGCAAGACGAACTTCTTTGAGAAGCGCGTGTCCGACTA 78492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179573976692638