Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4520 116 4e-21 seq3662 105 7e-18 seq633 95.1 1e-14 >seq4520 Length=427429 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || | ||| | | ||||||||||| |||||||||||| Sbjct 157707 CCACCACGGAGACGCAGGACAAGATGAAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAG 157648 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||| || || |||| | |||| ||||| || ||||| ||||| Sbjct 157647 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGAGGG 157588 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||| | ||||| || Sbjct 157587 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTG-TCGATGGTGTCTGAAGACTCGAC 157529 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||| | ||| || || || || || || ||||| |||||||| Sbjct 157528 CTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 157481 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || | ||| || ||||| | || || |||| Sbjct 158184 GACTCCTTTTGGATGTTGTAATCCGAAAGAGTGCGACCATCCTCCAACTGCTTGCCGGCG 158125 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||||||||| || || ||||| || ||||| ||| ||| || | Sbjct 158124 AAGATAAGACGCTGTTGGTCGGGCGGGATACCCTCCTTGTCTTGGATCTTTGCCTTGACG 158065 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||| ||||||| || | || || ||||||| || || Sbjct 158064 TTGTCGATCGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCAGTCAACGTCTTG 158005 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 158004 ACGAAAATCTGCATG 157990 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||| ||| || || || |||||| || || || |||| | Sbjct 157902 GACTCCTTCTGAATGTTGTAATCGGACAACGTCCGGCCGTCCTCAAGCTGCTTGCCGGCA 157843 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | ||||| |||||||| || || || || ||||| ||| | |||| || | Sbjct 157842 AAGATCAAGCGCTGCTGGTCCGGGGGAATCCCCTCCTTGTC-CTGAATCTTTGCCTTGAC 157784 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||| |||| |||||| ||||| | || | ||| || || |||| || | Sbjct 157783 GTTG-TCGATGGTATCGGACGACTCGACCTCAAGGGTGATCGTCTTGCCGGTCAACGTCT 157725 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 157724 TCACGAAGATTTGCAT 157709 >seq3662 Length=107388 Score = 105 bits (116), Expect = 7e-18 Identities = 135/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 || || || || | ||| | || |||||||| || |||| || | |||||||||||| Sbjct 78305 GCTCTCCCTGTTGGGCTCATTGGTATGAACGCCAAGCTCATGCGCCAATACATCGAGTTT 78364 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACG-CTCGCAATC 52767 |||||||||||||| | ||| ||| ||| || | ||| ||| ||||| | || || | Sbjct 78365 GTGGCGGATCGTCTCCTCGTGGCCCTC-GGCGGCGAGAAGCACTACAACGTCACG-AACC 78422 Query 52768 CGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAG 52827 | || || || ||| ||| || ||||| |||||||||| ||||| || |||||||| | Sbjct 78423 CCTTCGACTTCATGGACATGATCTCGCTCCAGGGCAAGACGAACTTCTTTGAGAAGCGCG 78482 Query 52828 T 52828 | Sbjct 78483 T 78483 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC-ATGTGCGAGTACATCGAGTT 52708 ||| | |||||| ||| | ||||||||||| ||| | |||||| | ||||||||||| Sbjct 75429 GCGTTACCGGTCTCGCTCATCGGCATGAACGC-CAGACTGATGTGCCAATACATCGAGTT 75371 Query 52709 TGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGC-AATC 52767 || || || || | | || ||| ||| | |||| ||| ||||| || | |||| Sbjct 75370 CGTCGCAGACCGGTTACTCGTCTCGCTGGGGAACGAAAAGCACTACAACG-TCACGAATC 75312 Query 52768 CGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAG 52827 | || || || ||| ||| || ||||| |||||||| ||||| ||||||||||| | Sbjct 75311 CCTTCGACTTCATGGACATGATCTCGCTCACCGGCAAGACGAACTTCTTCGAGAAGCGGG 75252 Query 52828 TCGGCGAGTA 52837 | |||||| Sbjct 75251 TGTCCGAGTA 75242 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || ||||| | || |||||||| |||||||| | || || || ||| ||| ||| Sbjct 77999 GCTGAGCGTCTCGTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTCGCC 78058 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 | ||||| | | || | | ||| | |||||||||||||| ||| ||||||| | Sbjct 78059 TCTATCTTCTGGTTGAAGAAGCGTGGCTTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 78118 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC 52553 ||||| || || || || ||||||| ||||| || |||||| Sbjct 78119 ATATCTCGTGATGAGGGCATGCACACCGACTTCGCCTGCCTC 78160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 52325 CGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGC 52384 |||||||||| | || ||||| | ||||| | ||||||| | ||| | | Sbjct 75839 CGTGCCGTGCATCAAGAAGAAGGCGGACTGGGCCCTCCGCTGGATCGCGGACGAACGCTC 75780 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 | | | || ||||| | || || |||||| || |||||| | || |||||||| Sbjct 75779 CGTGTTCGCAGAGCGTCTTGTAGCGTTCGCCGCTGTGGAGGGCATCTTCTTTTCCGGGTC 75720 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 || |||||||| || | | || | | ||| | ||||||||||| || || ||| Sbjct 75719 GTTCGCCGCCATATTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGCCTCACCTTTTCCAA 75660 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC 52553 || |||| || || ||||| || ||||||| |||||||| |||||| Sbjct 75659 TGAACTGATCTCACGAGACGAGGGTATGCACACCGACTTTGCATGCCTC 75611 >seq633 Length=42484 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||| || | || ||| |||||| || || || |||| Sbjct 35175 GACTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGCCCGTCCTCAAGCTGCTTCCCGGCG 35234 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 35235 AAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACG 35294 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | ||||| ||||||| ||| | || || || || || || || Sbjct 35295 TTGTCGATGGTATCCGAGGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTC 35354 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 35355 ACGAAGATCTGCATG 35369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || ||||||||||| || || || |||||| || || || |||| | Sbjct 34561 CTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 34620 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| ||||| ||||| ||||| || ||||| ||| || || | | Sbjct 34621 GATGAGCCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 34680 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||| | ||||| ||||| | ||| | ||| || || || || || || || Sbjct 34681 ATCAATCGTGTCCGAGGACTCAACCTCCAACGTGATCGTCTTGCCCGTGAGCGTCTTGAC 34740 Query 138603 AAAAATCTGCATG 138615 || ||||||||| Sbjct 34741 GAAGATCTGCATG 34753 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||| ||| | || || ||||| | || || || | | | Sbjct 34897 CTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCCAACTGCTTGCCCGCAAA 34956 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || ||||| ||||||||||| ||||| || ||||| ||| || || | | Sbjct 34957 GATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTCGCCTTGACGTT 35016 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||||| |||||| ||||||| || | || || || |||| || || || Sbjct 35017 GTCGATAGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGAC 35076 Query 138603 AAAAATCTGCAT 138614 ||| |||||||| Sbjct 35077 AAAGATCTGCAT 35088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496229392347120