Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3662 161 1e-34 >seq3662 Length=107388 Score = 161 bits (178), Expect = 1e-34 Identities = 344/505 (68%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| ||||| || ||||| || || |||||| ||| || ||||| | || |||||| Sbjct 78135 CCCTCATCACGAGATATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAAGCCACGCTTC 78076 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 ||||||||||| || | || ||||||||||||||||| ||||| || ||||| Sbjct 78075 TTCAACCAGAAGATAGAGGCGAAGGAGCCAGAGAAGAAGATACCCTCGACGGCAGCGAAG 78016 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGTATCA-AACCACTTCATCGCCCAC 127714 |||| |||||||| ||||| | |||| |||| | | ||| | | ||||| Sbjct 78015 GCAACGAGACGCTCAGCAAACG---CAGACTCCTTGTCGGAGATCCAGTGAAGAGCCCAG 77959 Query 127715 TGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTTC 127773 | ||||| |||| |||||| || | ||| | ||| || || ||||| | || | | Sbjct 77958 TCCGCCTTCTTCTTGATACAGGGAATGGTATCGATGGCGTCGAAGAGGTGCTCGCGCTGG 77899 Query 127774 TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCAT-TT 127832 || ||||| |||||||| | || ||||| ||||| || ||| ||||| | | Sbjct 77898 CGA-GGATCCTTGATGTATGTGTCGATGAGAAGGGAATAAGTCTCGGAGTGGATGTTCTC 77840 Query 127833 CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAA 127892 ||| || | ||| | ||||||| | || || ||| ||| ||||||| | | Sbjct 77839 CATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGCCGCCTGGACCTCATTCGAGA 77781 Query 127893 AATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATAT 127952 | | || ||||| || || ||||||||| ||||||| ||||| || | | Sbjct 77780 ACCGCTCGACGAGGTTCTCGTTGACGATACCATCGGACGCAGCAAAGAACGCGAGAACGT 77721 Query 127953 ACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGAGATCCTTTG 128009 | ||||| | |||| | ||||||| || | |||||||||| ||| ||||| | Sbjct 77720 GCGAGATGAAGTGACGTTCGTCGTCGTTCAGGCGGTTGTTCCAGTCGTGGAGGTCCTTGG 77661 Query 128010 AGAGATCTACCTCCTCCGCAGTCCA 128034 | || || | |||||| || ||||| Sbjct 77660 ACAGGTCCATCTCCTCAGCCGTCCA 77636 Score = 113 bits (124), Expect = 6e-20 Identities = 199/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||||||||| || ||||| |||||||| || ||| || || Sbjct 75618 GCAAAGTCGGTGTGCATACCCTCGTCTCGTGAGATCAGTTCATTGGAAAAGGTGAGGCCG 75677 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | || |||||||| | |||||| || || || || || || |||||||| Sbjct 75678 GGCATCAAGCCACGCTTCTTGAGCCAGAATATGGCGGCGAACGACCCGGAAAAGAAGATG 75737 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA---GGAGCGGGACTTTGTAT-C 127695 ||||||||| |||||||| | |||||||| || || |||||| || || | Sbjct 75738 CCCTCCACAGCGGCGAACGCTACAAGACGCTCTGCGAACACGGAGCG----TTCGTCCGC 75793 Query 127696 AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 | ||| | ||||| | ||||| |||| ||| || || ||||| | ||| || || Sbjct 75794 GATCCAGCGGAGGGCCCAGTCCGCCTTCTTCTTGATGCACGGCACGGTGTCGATGGCGTC 75853 Query 127756 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 ||||| | || | || |||||||||||| | || ||||| Sbjct 75854 GAAGAGGAACGCGCGCTCAGTGGGGTCTTTGATGTACGTGTCGATGAG 75901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613466394102360