Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4520 159 8e-34 seq633 134 3e-26 seq145 111 4e-19 seq2370 87.8 4e-12 >seq4520 Length=427429 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||||||||| || ||||||||||||||||||| ||||||||| | | || Sbjct 157701 CGGAGACGCAGGACAAGATGAAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTA 157642 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||| ||||||||||| |||||||| ||| || || Sbjct 157641 CGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGAGGGATGCCC 157582 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| |||||||| | || || || | | Sbjct 157581 TCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAAGACTCGACCTCGAGC 157522 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| || || ||||| || || Sbjct 157521 GTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTG 157484 Score = 140 bits (154), Expect = 8e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 |||||||||| || |||||||| |||| ||||||||||| | || | || || |||| Sbjct 158426 CAAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGACCGTCCTCCA 158367 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||||| |||||||| || |||||||| ||||| ||| || || ||||| | Sbjct 158366 ACTGCTTTCCAGCGAAGATAAGCCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGA 158307 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||||||| |||| ||||||| | || || || | |||||||||||| | Sbjct 158306 TCTTCGCCTTCACGTTGTCGATCGTGTCTGAGGACTCAACCTCTAGCGTGATCGTCTTCC 158247 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || || || ||||| || Sbjct 158246 CTGTGAGCGTCTTGACGAAAATCTG 158222 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||||||||||||||||| |||||| || | | ||| | ||||| Sbjct 158202 AGGACGAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGAAAGAGTGCGACCATCC 158143 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||||||||| |||||||| ||||| || || || || || Sbjct 158142 TCCAACTGCTTGCCGGCGAAGATAAGACGCTGTTGGTCGGGCGGGATACCCTCCTTGTCT 158083 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| ||| |||| ||||| | | || || || | ||||| ||| Sbjct 158082 TGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 158023 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || ||||| || Sbjct 158022 TTGCCAGTCAACGTCTTGACGAAAATCTG 157994 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 ||||| || || |||||||| || | |||||| || | ||| |||| || || || ||| Sbjct 157914 AGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGACAACGTCCGGCCGTCCTCAAGC 157855 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| ||||| ||||| | |||||||||||||| ||| || || ||||||||| Sbjct 157854 TGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGAATC 157795 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 ||| ||| ||| |||| ||| || | | || || || | ||||||||||| || Sbjct 157794 TTTGCCTTGACGTTGTCGATGGTATCGGACGACTCGACCTCAAGGGTGATCGTCTTGCCG 157735 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 || | || ||||| || ||||| Sbjct 157734 GTCAACGTCTTCACGAAGATTTG 157712 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| ||||||||||| |||| ||||||||| | | || | || || Sbjct 157464 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCGTCC 157405 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 || |||||||| || |||||||| || || |||||||| ||| Sbjct 157404 TCGAGCTGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCGGGA 157363 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||||||||| ||||||||||| ||||| | ||| | | ||||||||| |||| Sbjct 158117 CTTATCTTCGCCGGCAAGCAGTTGGAGGATGGTCGCACTCTTTCGGATTACAACATCCAA 158176 Query 200995 AAAGAGTCTACTCTTCACCTTGT 201017 || ||||| ||||||||||| || Sbjct 158177 AAGGAGTCGACTCTTCACCTCGT 158199 >seq633 Length=42484 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||| |||| ||||||||| | || || | || || Sbjct 34541 AGGACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCC 34600 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||| ||||||||||| ||| || || || ||| Sbjct 34601 TCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 34660 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| || | ||||| | | || || ||||||||||||||| Sbjct 34661 TGGATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCAACCTCCAACGTGATCGTC 34720 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || Sbjct 34721 TTGCCCGTGAGCGTCTTGACGAAGATCTG 34749 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 ||||| || || |||||||| || | |||||| || | | || | || || || ||| Sbjct 35163 AGGTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGCCCGTCCTCAAGC 35222 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| |||||||||||||||||||||||||| ||| || ||||| ||||| ||| Sbjct 35223 TGCTTCCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATC 35282 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| ||| |||| ||| || | | || || || | |||||| ||||| || Sbjct 35283 TTGGCCTTGACGTTGTCGATGGTATCCGAGGACTCGACCTCGAGCGTGATGGTCTTGCCG 35342 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || || Sbjct 35343 GTGAGGGTCTTCACGAAGATCTG 35365 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 || ||||| || |||||| |||| |||||| || | | || | ||||| |||| | Sbjct 34883 AGATGGAGGGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCCAAC 34942 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || || ||||| || ||||||||||||||| ||| || || || || ||| Sbjct 34943 TGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATC 35002 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| ||| |||| ||||| | | || || || | ||||| ||||| || Sbjct 35003 TTCGCCTTGACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCG 35062 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 || | || || ||||| || || Sbjct 35063 GTCAAGGTCTTGACAAAGATCTG 35085 >seq145 Length=336 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || ||||||||||| |||| |||||| || | | || | || || Sbjct 69 AGGACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTACGGCCGTCC 128 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||| ||||||||||| || ||| || || ||| Sbjct 129 TCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCC 188 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||||| | | || || || | ||||||||| Sbjct 189 TGGATCTTCGCCTTGACATTGTCGATCGTGTCCGACGACTCGACCTCGAGAGTGATCGTC 248 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || || || || || || Sbjct 249 TTCCCCGTCAAGGTCTTGACGAAGATCTG 277 >seq2370 Length=61181 Score = 87.8 bits (96), Expect = 4e-12 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAG-TCCTTCCATC 199476 ||||||||||| || || |||||||| |||| ||||||||| || || | | | || || Sbjct 54693 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC-GCTAAGGGTGCGGCCGTC 54635 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| || || ||||| |||||||||||||| || Sbjct 54634 CTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCGGG 54593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178841226651507