Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5091 214 2e-50 seq4242 127 3e-24 seq2479 122 1e-22 >seq5091 Length=195002 Score = 214 bits (236), Expect = 2e-50 Identities = 261/356 (73%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || |||||||| | ||| ||||| || ||||| || ||||| || |||||||| Sbjct 106490 ATCGAAGTCCTCACCACCGAGGTGAGTATCACCAGCGGTGGCCTTGACCTCGAAGATACC 106431 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | ||||| | | | || ||||| || ||||| ||||| || || || ||||| || Sbjct 106430 CTCCTCAATCGTCAGGAGGGAGACATCGAAGGTACCTCCACCGAGATCGAAGATGAGGAC 106371 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| ||| | | | ||||| ||||||||||| ||||| || || ||||| || || Sbjct 106370 GTTGCGCTCGCCCTGGGTCTTCTTGTCGAGACCGTAGGCGATGGCGGCGGCCGTGGGCTC 106311 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || ||||| || ||| || ||||| || || |||| || || ||||| || || Sbjct 106310 GTTGATGATACGGAGGACGTTGAGACCAGCGATGGTACCCGCGTCCTTGGTCGCCTGACG 106251 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 |||||| ||||| ||||| || || || || ||||||||| ||||| | ||||| Sbjct 106250 TTGCGAGTCGTTGAAGTATGCGGGAACGGTGACGACCGCGGAGGTGACGGTGCCGCCGAG 106191 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 || || ||||| || || ||||| || || || ||||| || || ||||| |||| Sbjct 106190 GTAGGACTCCGCAATCTCCTTCATCTTCGTGAGGACCATGGAGGAGATCTCCTCAG 106135 Score = 116 bits (128), Expect = 5e-21 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 ||||| ||| | || |||| |||| ||||| | ||||| |||||||| || || Sbjct 105996 TTCATGTCGGCCTGAACCTCGGGGTCGCTGAACTTGCGGCCGATGAGACGCTTGGCGTCG 105937 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| | ||||||||| || ||||||||||| || || || || | || Sbjct 105936 AAGACGGTGTTGTGGGGGTTCATCGCGACCTGGTTCTTCGCGGCATCGCCAATCAACCGC 105877 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | || || || |||||||| || || || || || || || |||||||| ||| Sbjct 105876 TC---GCTGTCGGTGAAGGCGACGTAGGAGGGTGTTGTGCGGTTACCCTGGTCGTTGGCA 105820 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || || || || || |||||||| |||||||| Sbjct 105819 ATGATCTCGACCCGATCATTCTGCCAGACACCGACGCA 105782 >seq4242 Length=23589 Score = 127 bits (140), Expect = 3e-24 Identities = 243/356 (68%), Gaps = 9/356 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| ||||| || || || || ||| || || | ||| Sbjct 10256 TCGAAGTCCTCACCACCAAGGTGGGTATCACCGGCAGTAGCCAAGACCTCGAATACACCG 10315 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA---AATGAGT 7573 | || ||| | | || ||||| || || || ||||| || || | ||||| | Sbjct 10316 TCGTCGATGGAGAGGAGGGACACATCGAAGGTTCCTCCACCGAGATCGTACACAATGATT 10375 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || ||| || | || ||| ||||||||||| ||||| || || || || || Sbjct 10376 ---TGCGACTCGCCGCCCTT---CTTGTCGAGACCGTAGGCGATCGCGGCAGCGGTAGGC 10429 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| ||| | || ||||| || || | ||||| || ||||| || Sbjct 10430 TCGTTGATGATACGGAGAACCTGAAGACCAGCGATGGTACCGGCATCCTTGGTCGCCTGA 10489 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || | ||||| |||||||| ||||| || ||||| |||| ||||| ||| Sbjct 10490 CGCTGAGCGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTGAGTGACCGAGCGGCCG 10549 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || |||| || ||| | || ||||| ||| |||||||| | || ||||| || Sbjct 10550 AGGTACGCCTCAGCGGTCTCCTTCATCTTGCCCAGAACCATGGCGGAGATCTCCTC 10605 >seq2479 Length=51413 Score = 122 bits (134), Expect = 1e-22 Identities = 189/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || || ||||| | || | ||| Sbjct 23220 TCGAAGTCCTCACCACCCAAGTGGGTGTCACCAGCAGTGGCCTTGACGGCGAAAACACCA 23161 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||||| | | || ||||| ||||| || ||||| || || || ||||| ||| Sbjct 23160 CCAGTGATGTTGAGGAGGGAGACATCGAACGTTCCTCCACCAAGATCGAAGATGAGGACG 23101 Query 7577 TTCGTATCGTCGTCTTTG--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 ||| | || || ||| | ||||||||||| || || || ||||| || || | Sbjct 23100 TTCTTCTC--CGCACTTGACTGGCGGTCGAGACCGTAGGCAATGGCGGCCGCGGTGGGCT 23043 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || || ||||| ||| | |||||||| || | | ||||| || ||||| | | Sbjct 23042 CGTTGATGATACGGAGAACCTCGAGGCCAGCGATGGAACCAGCATCCTTGGTCGCGAGAC 22983 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 |||| || || || |||||||| ||||| Sbjct 22982 GTTGGGAGTCATTGAAGTAGGCAGGGAC 22955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635090555729640