Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3662 140 4e-28 seq2326 96.9 4e-15 >seq3662 Length=107388 Score = 140 bits (154), Expect = 4e-28 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 102085 AGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTA 102144 |||| ||||| || |||||| | || |||| ||||| | ||||| ||||| |||||| Sbjct 77907 AGCACCTCTTCGACGCCATCGATACCATTCCCTGTATCAAGAAGAAGGCGGACTGGGCTC 77966 Query 102145 TGAAGTGGTT-TGATACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGT 102201 | | ||| | | |||| |||| | | ||||||||||| ||| | || || || Sbjct 77967 TTCACTGGATCTCCGACAAGGAGTC---TGCGTTTGCTGAGCGTCTCGTTGCCTTCGCTG 78023 Query 102202 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAG 102261 || |||||||||||||||||||| |||||| | |||| | ||| | |||||||| | Sbjct 78024 CCGTCGAGGGTATCTTCTTCTCTGGCTCCTTCGCCTCTATCTTCTGGTTGAAGAAGCGTG 78083 Query 102262 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 | | ||||| || || ||||||||||||||| || |||||||| ||||| Sbjct 78084 GCTTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATATCTCGTGATGAGGG 78135 Score = 91.5 bits (100), Expect = 2e-13 Identities = 169/246 (69%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 ||||| || |||||| | || || || || || | ||||| ||||| ||||| | Sbjct 75859 CTCTTCGACGCCATCGACACCGTGCCGTGCATCAAGAAGAAGGCGGACTGGGCCCTCCGC 75800 Query 102150 TGGTTTGAT-ACAAAGTCGCGTTCC---TTTGCTGAGCGACTCTTCGCATTTGCGTGTGT 102205 ||| | | || || || ||| || || ||||| || | || || || ||| Sbjct 75799 TGGATCGCGGACGAA----CGCTCCGTGTTCGCAGAGCGTCTTGTAGCGTTCGCCGCTGT 75744 Query 102206 TGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCT 102265 ||||| |||||||| || || || ||| ||| || | |||||||||||||| || | Sbjct 75743 GGAGGGCATCTTCTTTTCCGGGTCGTTCGCCGCCATATTCTGGCTCAAGAAGCGTGGCTT 75684 Query 102266 CATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGA 102325 ||||| || ||| ||| ||||| || || ||||| || |||||||| | ||| || Sbjct 75683 GATGCCCGGCCTCACCTTTTCCAATGAACTGATCTCACGAGACGAGGGTATGCACACCGA 75624 Query 102326 GTTTGC 102331 ||||| Sbjct 75623 CTTTGC 75618 >seq2326 Length=152795 Score = 96.9 bits (106), Expect = 4e-15 Identities = 198/292 (68%), Gaps = 8/292 (3%) Strand=Plus/Plus Query 176764 ATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACC 176823 ||||||||||| ||||||||| || ||||| || | ||| || || || || Sbjct 28120 ATCCGTCATGAGCATGAGACGGCCGTACCGCAGGGTGCTAACGTCCGTGTACTCTTTGTT 28179 Query 176824 CTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGT 176883 || || | |||| ||||||||||| || | || ||||| ||| ||| || Sbjct 28180 ATGCTGCAACCCCAGGATCTTCTTGATATTCTGGATCTCTTCGTTCTTCATGATTTGGTC 28239 Query 176884 GACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATC 176943 | ||| |||||||| || ||| |||||||| |||||||||||| ||| || Sbjct 28240 GTGCTTGGCGTCACGAACGTTAAGCAGCTTTCCACGAAGTGGGAAGACACCGAAGTTGTC 28299 Query 176944 GCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCAC 177003 ||| ||||| ||| ||||| || | || | || | || || || ||||| |||| Sbjct 28300 GCGTCCAACGACACCAAGACCAGCGATGGCCAACGCCCTGGCGGAGTCGCCCTCAGTCAG 28359 Query 177004 GATGAGTGTACACT----TGCCAGATTGTGCCGTACCCGCCTTGTTCGCATC 177051 ||||||||||| | |||| ||| | ||| || || ||||| ||||| Sbjct 28360 AATGAGTGTACAATCCGCTGCC---TTGCG-CGTGCCGGCGTTGTTTGCATC 28407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620701112871120