Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3662 235 1e-56 >seq3662 Length=107388 Score = 235 bits (260), Expect = 1e-56 Identities = 383/550 (70%), Gaps = 5/550 (1%) Strand=Plus/Minus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 |||||| ||||| |||||| ||| || || || |||||| ||||||||||| || Sbjct 78157 GCAGGCGAAGTCGGTGTGCATGCCCTCATCACGAGATATGAGCTCGTTGGAGAAGGTCAG 78098 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 || ||||| | || | || || | |||||| || | ||||| |||||||||||||| Sbjct 78097 GCCGGGCATCAAGCCACGCTTCTTCAACCAGAAGATAGAGGCGAAGGAGCCAGAGAAGAA 78038 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||| ||||| || || ||||| || ||| | ||| | || | || | |||||| || Sbjct 78037 GATACCCTCGACGGCAGCGAAGGCAACGAGACGCTCAGCAAACGCAGACTCCTTGTCGGA 77978 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 ||||||| ||| |||||||| |||||||||||||| || || || || || ||||| Sbjct 77977 GATCCAGTGAAGAGCCCAGTCCGCCTTCTTCTTGATACAGGGAATGGTATCGATGGCGTC 77918 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 |||||| | || || || | | ||| | || || || || | || | Sbjct 77917 GAAGAGGTGCTCGCGCTGGCGAGGATCCTTGATGTATGTGTCGATGAGAAGGGAATAAGT 77858 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||| ||||||||| | ||||| | | Sbjct 77857 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGCCGC 77798 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| || || | ||||| | ||| | || ||||| ||||| || ||||| || ||||| Sbjct 77797 CTGGACCTCATTCGAGAACCGCTCGACGAGGTTCTCGTTGACGATACCATCGGACGCAGC 77738 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATTCC 48605 |||||| || || || || | ||| || || |||| || | | || || |||| Sbjct 77737 AAAGAACGCGAGAACGTGCGAGATGAAGTGACGTTCGTCGTCGTTCAG-GCGGTTGTTCC 77679 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | || | ||| ||| |||||||| || || | |||||||||||||| || | Sbjct 77678 AGTCGTGGAGGTCCTTGGACAGGTCCATCTCCTCAGCCGTCCAGAAGGACGCCTCAGCCT 77619 Query 48666 TTTTGTACAT 48675 | |||||||| Sbjct 77618 TCTTGTACAT 77609 Score = 210 bits (232), Expect = 4e-49 Identities = 385/560 (69%), Gaps = 7/560 (1%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| |||||||| |||||| || ||||| || ||| || | ||||| ||| ||| Sbjct 75614 GCATGCAAAGTCGGTGTGCATACCCTCGTCTCGTGAGATCAGTTCATTGGAAAAGGTGAG 75673 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 || ||||| | || | || ||||||||||| || || ||||| || || || ||||| Sbjct 75674 GCCGGGCATCAAGCCACGCTTCTTGAGCCAGAATATGGCGGCGAACGACCCGGAAAAGAA 75733 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGA--AAGAAGCGTTCTTGTCT 48307 |||||||||||| || |||||||| || | |||| ||| | | ||||||| ||| Sbjct 75734 GATGCCCTCCACAGCGGCGAACGCTACAAGACGCTCTGCGAACACGGAGCGTTC--GTCC 75791 Query 48308 GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCC 48367 | ||||||| || |||||||| ||||||||||||||||| |||| || || ||||| Sbjct 75792 GCGATCCAGCGGAGGGCCCAGTCCGCCTTCTTCTTGATGCACGGCACGGTGTCGATGGCG 75851 Query 48368 CGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 |||||| | || |||| | ||| | || || || || | |||| Sbjct 75852 TCGAAGAGGAACGCGCGCTCAGTGGGGTCTTTGATGTACGTGTCGATGAGGAGGGAGTAC 75911 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 |||| || ||||| ||||| || ||||||||| ||||||||| | |||||| Sbjct 75912 GTCTCCGAATGCACGTTCTCGATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGCG 75971 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | || || || | ||||| | ||| | || ||||| || || || || ||||| || Sbjct 75972 GCTTGGACCTCGTTAGAGAACCGCTCAACGAGGTTCTCGTTCACGATGCCGTCTGAGGCG 76031 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA--GAGC-ATTC 48604 || |||||||| || || | | ||| || || |||||| | | || | | Sbjct 76032 GCGAAGAAGGCTAGCACGTAGGAGATGAAGTGCCGTTCGTTGGCATTTAACTTGCGGTCC 76091 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| || | ||| | ||||| | ||||| || |||||||||||||| | || Sbjct 76092 CAGTCCATGAGGTCGTGCGAGAGGTCTATCTCTTCTACCGTCCAGAAGGACGCTTGAGCA 76151 Query 48665 TTTTTGTACATGCCCCATAT 48684 ||||||||||| |||||| Sbjct 76152 TTTTTGTACATCTGCCATAT 76171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931470841424640