Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3662 165 1e-35 >seq3662 Length=107388 Score = 165 bits (182), Expect = 1e-35 Identities = 345/505 (68%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||| ||||| || ||||| || || |||||| ||| || ||||| | || |||||| Sbjct 78135 CCCTCATCACGAGATATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAAGCCACGCTTC 78076 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 ||||||||||| || | || ||||||||||||||||| ||||| || ||||| Sbjct 78075 TTCAACCAGAAGATAGAGGCGAAGGAGCCAGAGAAGAAGATACCCTCGACGGCAGCGAAG 78016 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGTATCA-AACCACTTCATCGCCCAC 130210 |||| ||||||||||||||| | |||| |||| | | ||| | | ||||| Sbjct 78015 GCAACGAGACGCTCAGCAAACG---CAGACTCCTTGTCGGAGATCCAGTGAAGAGCCCAG 77959 Query 130211 TGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTTC 130269 | |||||| |||| |||||| || | ||| | ||| || || ||||| | || | | Sbjct 77958 TCCGCCTTCTTCTTGATACAGGGAATGGTATCGATGGCGTCGAAGAGGTGCTCGCGCTGG 77899 Query 130270 TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCAT-TT 130328 || ||||| |||||||| | || ||||| ||||| || ||| |||| | | Sbjct 77898 CGA-GGATCCTTGATGTATGTGTCGATGAGAAGGGAATAAGTCTCGGAGTGGATGTTCTC 77840 Query 130329 CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGCAA 130388 ||| || | ||| | ||||||| | || || ||| ||| ||||||| | | Sbjct 77839 CATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGCCGCCTGGACCTCATTCGAGA 77781 Query 130389 AATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATAT 130448 | | || ||||| || || ||||||||| ||||||| ||||| || | | Sbjct 77780 ACCGCTCGACGAGGTTCTCGTTGACGATACCATCGGACGCAGCAAAGAACGCGAGAACGT 77721 Query 130449 ACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGATCCTTCG 130505 | ||||| | |||| | ||||||| || | |||||||||| || ||||| | Sbjct 77720 GCGAGATGAAGTGACGTTCGTCGTCGTTCAGGCGGTTGTTCCAGTCGTGGAGGTCCTTGG 77661 Query 130506 AGAGATCTACCTCCTCCGCAGTCCA 130530 | || || | |||||| || ||||| Sbjct 77660 ACAGGTCCATCTCCTCAGCCGTCCA 77636 Score = 122 bits (134), Expect = 1e-22 Identities = 201/288 (70%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | ||||||||| || ||||| |||||||| || ||| || || Sbjct 75618 GCAAAGTCGGTGTGCATACCCTCGTCTCGTGAGATCAGTTCATTGGAAAAGGTGAGGCCG 75677 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | || |||||||| | |||||| || || || || || || |||||||| Sbjct 75678 GGCATCAAGCCACGCTTCTTGAGCCAGAATATGGCGGCGAACGACCCGGAAAAGAAGATG 75737 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA---GGAGCGGGACTTTGTAT-C 130191 ||||||||| |||||||| | |||||||| || || |||||| || || | Sbjct 75738 CCCTCCACAGCGGCGAACGCTACAAGACGCTCTGCGAACACGGAGCG----TTCGTCCGC 75793 Query 130192 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251 | ||| | ||||| | |||||| |||| ||| ||||| ||||| | ||| || || Sbjct 75794 GATCCAGCGGAGGGCCCAGTCCGCCTTCTTCTTGATGCACGGCACGGTGTCGATGGCGTC 75853 Query 130252 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 ||||| | || | || |||||||||||| | || ||||| Sbjct 75854 GAAGAGGAACGCGCGCTCAGTGGGGTCTTTGATGTACGTGTCGATGAG 75901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618394066328760