Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4520 149 2e-30 seq5091 93.3 1e-13 >seq4520 Length=427429 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || |||||||||||||| ||||| ||||| || || | Sbjct 157715 TTTGCATACCACCACGGAGACGCAGGACAAGATGAAGAGTCGACTCCTTTTGGATGTTGT 157656 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || || |||||||| ||||||||||| | Sbjct 157655 AGTCGGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGT 157596 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || || ||||| || || || || ||||| || || | || || | Sbjct 157595 CGGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAAG 157536 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| || || || || || ||||| |||||||| Sbjct 157535 ACTCGACCTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 157481 Score = 123 bits (136), Expect = 8e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || |||||||| || || || || || ||||| | || || || || || | Sbjct 158426 CAAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGACCGTCCTCCA 158367 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || |||||||| ||||| || || |||||||| || ||||| || || |||||||| | Sbjct 158366 ACTGCTTTCCAGCGAAGATAAGCCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGA 158307 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || |||| || || | ||||| || || || | ||||| | Sbjct 158306 TCTTCGCCTTCACGTTGTCGATCGTGTCTGAGGACTCAACCTCTAGCGTGATCGTCTTCC 158247 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || ||||||||||| Sbjct 158246 CTGTGAGCGTCTTGACGAAAATCTGCAT 158219 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || || || |||||||| ||||| ||||| || || ||||| Sbjct 158221 CATGCCACCGCGCAGGCGGAGGACGAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATC 158162 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || | || || || || ||||| ||||| || || || || Sbjct 158161 CGAAAGAGTGCGACCATCCTCCAACTGCTTGCCGGCGAAGATAAGACGCTGTTGGTCGGG 158102 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || || || || || || |||| || || | || Sbjct 158101 CGGGATACCCTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGACTC 158042 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| || || | || || || ||||||||||| Sbjct 158041 AACCTCGAGGGTGATGGTCTTGCCAGTCAACGTCTTGACGAAAATCTGCAT 157991 >seq5091 Length=195002 Score = 93.3 bits (102), Expect = 1e-13 Identities = 244/371 (66%), Gaps = 1/371 (0%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||| ||||| || | || | || | || || || || || | || Sbjct 106164 AAGATGAAGGAGATTGCGGAGTCCTACCTCGGCGGCACCGTCACCTCCGCGGTCGTCACC 106223 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || || || || | || ||| || || || || || || | ||| || Sbjct 106224 GTTCCCGCATACTTCAACGACTCGCAACGTCAGGCGACCAAGGACGCGGGTACCATCGCT 106283 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || || || | || || || || ||||| || || || || || || || || Sbjct 106284 GGTCTCAACGTCCTCCGTATCATCAACGAGCCCACGGCCGCCGCCATCGCCTACGGTCTC 106343 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | || | || || | || || || ||| | ||||| ||||| || Sbjct 106344 GACAAGAAGACCCAGGGCGAGCGCAACGTCCTCATCTTCGATCTCGGTGGAGGTACCTTC 106403 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || || || || |||| ||||| || || || || || || || ||||||||| Sbjct 106404 GATGTCTCCCTCCTGACGATTGAGGAGGGTATCTTCGAGGTCAAGGCCACCGCTGGTGAT 106463 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTT 349921 || || || ||||| || || || ||||| || ||||| || || || | || || Sbjct 106464 ACTCACCTCGGTGGTGAGGACTTCGATAACCGCCTCGTCAACCACTTCGTCCAGGAGTTC 106523 Query 349922 AAGCGTCAAGC 349932 ||||| ||||| Sbjct 106524 AAGCG-CAAGC 106533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515151097057763