Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3662 138 1e-27 seq2710 111 2e-19 seq4755 104 3e-17 >seq3662 Length=107388 Score = 138 bits (152), Expect = 1e-27 Identities = 341/512 (67%), Gaps = 8/512 (2%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| |||||| ||||| | ||||| ||||| | ||||||||||| | ||| || ||| Sbjct 75651 ATCAGTTCATTGGAAAAGGTGAGGCCGGGCATCAAGCCACGCTTCTTGAGCCAGAATATG 75710 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 || ||| || || ||||||||||| || ||| || || || ||||| || | Sbjct 75711 GCGGCGAACGACCCGGAAAAGAAGATGCCCTCCACAGCGGCGAACGCTACAAGACGCTCT 75770 Query 74904 GCGA--ACGGTGC-ATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACC 74960 |||| |||| || ||| | ||||| | ||||| || || || |||| Sbjct 75771 GCGAACACGGAGCGTTCGTCCGCGATCCAGCGGAGGGCCCAGTCCGCCTTCTTCTTGA-T 75829 Query 74961 GCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAG 75019 ||| || || || ||||| || | ||||||| || ||| ||| || |||| | Sbjct 75830 GCACGGCACGGTGTCGATGGCGTCGAAGAGGAACGCGCGCTCAGTGGGGTCTTTGATGTA 75889 Query 75020 CTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGC 75079 | |||| || | || ||||||||||||||||| | |||| | | |||| | | Sbjct 75890 CGTGTCGATGAGGAGGGAGTACGTCTCCGAATGCACGTTCTCGATCATGATCTGGAAGCC 75949 Query 75080 GTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTC 75139 |||||| | || |||||||| || || || || || || | ||| ||||| Sbjct 75950 GTAGAAGCAGCGGGCCTCTGCGGCTTGGACCTCGTTAGAGAACCGCTCAACGAGGTTCTC 76009 Query 75140 CATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTC 75199 | ||||||||||| ||||||||||| || || || || ||| ||||| || || Sbjct 76010 GTTCACGATGCCGTCTGAGGCGGCGAAGAAGGCTAGCACGTAGGAGATGAAGTGCCGTTC 76069 Query 75200 ATCGTCAGTGAGTTT---GTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGAC 75256 | | || | | || |||||| ||| | ||||| || | || ||||| || || Sbjct 76070 GTTGGCATTTAACTTGCGGTCCCAGTCCATGAGGTCGTGCGAGAGGTCTATCTCTTCTAC 76129 Query 75257 CGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 ||||||||| | | || |||||||||| Sbjct 76130 CGTCCAGAAGGACGCTTGAGCATTTTTGTACA 76161 Score = 109 bits (120), Expect = 6e-19 Identities = 327/495 (66%), Gaps = 16/495 (3%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| | ||||||||||||||||| ||||| | |||||| ||| |||| Sbjct 78099 AGGCCGGGCATCAAGCCACGCTTCTTCAACCAGAAGATAGAGGCGAAGGAGCCAGAGAAG 78040 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG---CATCGGAA 74921 ||||| || ||||| || ||||| || || || | || |||| | | | | Sbjct 78039 AAGATACCCTCGACGGCAGCGAAGGCAACGAGACGCTCAGCAAACGCAGACTCCTTGTCG 77980 Query 74922 GTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGC 74980 | ||||| ||||||| || || || |||| ||||| | |||||||| || Sbjct 77979 GAGATCCAGTGAAGAGCCCAGTCCGCCTTCTTCTTGA-TACAGGGAATGGTATCGATGGC 77921 Query 74981 TTGGAAGAGGCTTGCCTTCTCT-TCG-GGATCCTTGACGAGCTTGTCAATCATAAGTGAG 75038 | ||||||| ||| | || || |||||||||| | |||| || | ||| || Sbjct 77920 GTCGAAGAGG--TGCTCGCGCTGGCGAGGATCCTTGATGTATGTGTCGATGAGAAGGGAA 77863 Query 75039 TACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCT 75098 || ||||| || || || ||| | | |||| | ||||||| | || ||||| Sbjct 77862 TAAGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCG 77803 Query 75099 GCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 || ||| || || || || || | | ||| ||||| ||||||| || || || Sbjct 77802 GCCGCCTGGACCTCATTCGAGAACCGCTCGACGAGGTTCTCGTTGACGATACCATCGGAC 77743 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGT---GAGTTTG 75215 || || || || || || || ||| ||||| || || ||||| | | | ||| Sbjct 77742 GCAGCAAAGAACGCGAGAACGTGCGAGATGAAGTGACGTTCGTCGTCGTTCAGGCGGTTG 77683 Query 75216 TCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAA 75273 | ||| || | |||||| | || || |||||||| |||||||||| || || | Sbjct 77682 TTCCAGTCGTGGAGGTCCTTGGACAGGTCCATCTCCTCAGCCGTCCAGAAGGACGCCTCA 77623 Query 75274 TCGCCTTTTTGTACA 75288 ||||| ||||||| Sbjct 77622 --GCCTTCTTGTACA 77610 >seq2710 Length=24590 Score = 111 bits (122), Expect = 2e-19 Identities = 214/312 (69%), Gaps = 13/312 (4%) Strand=Plus/Plus Query 124591 CGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCT-------CGATTGGCTTGGCC 124643 |||| |||||||| ||||| ||||| ||||||||||| | |||||| |||| || Sbjct 22703 CGTGTCCCCAGTCACGCTTCGCATCGAGGTTTCCGAGGTACAGGCACGATTG-CTTGCCC 22761 Query 124644 GTCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAAC-TCGGAACCGCG 124702 | | |||||| | | | ||||||||| || || ||| || | || || Sbjct 22762 AAGAAGATG---TCCGCCGCGGCGCGCGAAATCTTGCGAGTGACGAACGTCCGG-CCACG 22817 Query 124703 TCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCG 124762 || ||||||||||||||| || ||||| | || || |||| ||||||| ||| || Sbjct 22818 GCGGGGAGACTCGTGGTTGAAGAGGATGCCGTTGCAAGCGTACATGCCGTACGCCTCACG 22877 Query 124763 GTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTA 124822 |||||| ||| ||||| |||| ||||||||| || ||||| || || ||||| Sbjct 22878 GTAGTTGACCGTGATCCAGAACCCGTAGAGCTTGGCGACACCATATGGCGAGCGCGGGTA 22937 Query 124823 GAATGGGGTGTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACC 124882 ||| || || | || ||||| | | | | ||| || ||| |||||| || Sbjct 22938 GAACGGCGTCGTCTCGTTTTGCGGCGTCTCGACGACCTTGCCGTACAGCTCCGACGTCGA 22997 Query 124883 CGCCTGATAGAA 124894 |||||| ||||| Sbjct 22998 CGCCTGGTAGAA 23009 >seq4755 Length=85889 Score = 104 bits (114), Expect = 3e-17 Identities = 172/243 (71%), Gaps = 9/243 (4%) Strand=Plus/Minus Query 55694 GGGTCCGTCCAGAATCTGGAGAT--TCCTCTGCG-TCTCAAGGAGATTTACCGGACGGTG 55750 || || |||||||| | || || ||| | || | |||||| || ||| ||| || Sbjct 30348 GGCTCGGTCCAGAACATCGACATCATCCCCGACGATGTCAAGGCCATCTACAAGACCGTC 30289 Query 55751 TGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGAC 55810 |||||||| | ||||||| | | ||| | || || |||||||| | |||| | Sbjct 30288 TGGGAGATCTCCCAGAAGAAGGTCCTCGACCTCGCCGCCGACCGTGGTGCTTTCATCTGC 30229 Query 55811 CAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTC-ACTGGCCAAGTT--GAGCTCG 55867 ||||| || || || ||| || | || || ||| | || |||||| | |||| Sbjct 30228 CAGTCTCAATCCCTCAACGTCCACCTGCAGGCCCCTACCACGGGCCAACTGACGAGC--- 30172 Query 55868 ATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGC 55927 |||||||| ||||| ||||||||||| |||||||| || |||||||| ||||| || ||| Sbjct 30171 ATGCACTTCTACGGTTGGAAGAAGGGTCTCAAGACCGGCATGTACTACCTGCGCACACGC 30112 Query 55928 GCC 55930 || Sbjct 30111 CCC 30109 Score = 100 bits (110), Expect = 3e-16 Identities = 180/262 (69%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | || |||||||| |||| | ||| | ||||| ||| Sbjct 32031 TCATGCGTGTCGCTGTCGGCATCCACGGATCCGACATCGAGCGCGCGATCGAGACCTACA 31972 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | ||||| || || || | || || ||||||||||| || || Sbjct 31971 ACCTCATGTCCGAGCGTTACTTCACCCATGCGTCACCTACACTGTTCAACGCCGGCACTC 31912 Query 53313 ATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 |||| ||| | |||| ||||||| ||| |||||||||||||||| ||||| | Sbjct 31911 CCAACCCCCAGCTC---AGCTCTTGCTTCCTCGTGTCGATGAAGGATGACTCCATCGAGG 31855 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | |||||| |||||| ||||| |||||| ||| ||| | | || || || |||| Sbjct 31854 GTATCTACTCGACGCTGAAGGACTGTGCCATGATCAGTAAGACGGCTGGCGGCATTGGTA 31795 Query 53430 TCCACTGCTCGAACGTCCGTGC 53451 || || | ||| ||||||| Sbjct 31794 TCAACATCCACAACATCCGTGC 31773 Score = 93.3 bits (102), Expect = 5e-14 Identities = 130/181 (72%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 55098 ACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCG 55157 |||| | ||||| ||||| |||||| || || | ||||||||||| |||||| Sbjct 31008 ACTTCCAGAAGCTGCACGACGTGACGAAGGTGGTCGCGTTCAACCTGAACCGCATCATCG 30949 Query 55158 ACAAGAATTACTACCCGA---CTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCA 55214 || || ||||| |||| | || ||| ||| || ||| | || ||||| |||| Sbjct 30948 ACGTCAACTACTATCCGATCCCCGAGGCGAGGCGT---TCAAACATGCGCCACCGTCCCA 30892 Query 55215 TCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACT 55274 ||| |||||||| ||||| |||||||| ||||||| ||| | |||||||||||| Sbjct 30891 TCGGTATCGGTGTGCAGGGTCTGGCCGACGCCTTCATGGCCCTCCGCATGCCCTTCGACT 30832 Query 55275 C 55275 | Sbjct 30831 C 30831 Score = 86.0 bits (94), Expect = 7e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 53470 GGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGC 53529 ||| || |||||| || | || ||||| |||||| | || || | | | || || Sbjct 31705 GGGTACCAACGGCTATTCCAACGGCATCGTCCCTATGTTGCGGGTATACGATGCTACTGC 31646 Query 53530 CCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCC 53589 || |||||| | |||||||| ||||| || | |||||||||||||||||||| Sbjct 31645 TCGTTACGTCGATCAGGGTGGCAACAAGCGTCCCGGCGCTTTCGCCATCTACCTCGAGCC 31586 Query 53590 GTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT 53649 ||||||||||||| | | ||||| | || || || ||| || || | || ||| | Sbjct 31585 GTGGCACGCCGACGTCTTCGAGTTCATTGACCTTCGCAAGAACCACGGAAAGGAGGAGGT 31526 Query 53650 GCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTT 53694 ||| ||| || || || || || ||||| || || || || Sbjct 31525 TCGCGCCCGCGATCTATTCTATGCGCTTTGGATACCCGATCTTTT 31481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547179603295800