Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4520 141 8e-29 seq633 107 2e-18 seq145 104 2e-17 >seq4520 Length=427429 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| | || || || || || || | || Sbjct 157990 CATGCAGATTTTCGTCAAGACGTTGACTGGCAAGACCATCACCCTCGAGGTTGAGTCTTC 158049 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| || | ||||| ||| || |||||||| || || || || ||||| || Sbjct 158050 CGACACGATCGACAACGTCAAGGCAAAGATCCAAGACAAGGAGGGTATCCCGCCCGACCA 158109 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||| | || | ||||||||| || ||||| || || || |||| |||||||| Sbjct 158110 ACAGCGTCTTATCTTCGCCGGCAAGCAGTTGGAGGATGGTCGCACTCTTTCGGATTACAA 158169 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||||||||||||| | || | || | || |||| |||||||| Sbjct 158170 CATCCAAAAGGAGTCGACTCTTCACCTCGTCCTCCGCCTGCGCGGTGGCAT 158220 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||||||||| | || || ||||| || || ||||| Sbjct 157709 ATGCAAATCTTCGTGAAGACGTTGACCGGCAAGACGATCACCCTTGAGGTCGAGTCGTCC 157768 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| ||| ||||| ||||| || || || || || || || Sbjct 157769 GATACCATCGACAACGTCAAGGCAAAGATTCAGGACAAGGAGGGGATTCCCCCGGACCAG 157828 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||||| || | || ||| | ||| | |||||||||||| Sbjct 157829 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGGACGTTGTCCGATTACAAC 157888 Query 27168 ATTCAAAAGGAGTCGACC 27185 ||||| |||||||| ||| Sbjct 157889 ATTCAGAAGGAGTCTACC 157906 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || || || || || | || Sbjct 157481 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCTTCA 157540 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || ||||| || Sbjct 157541 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 157600 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||||| || | || || | ||| | ||||| |||||| Sbjct 157601 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAAC 157660 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||||||||| | ||| | || ||||| | || ||||| || Sbjct 157661 ATCCAAAAGGAGTCGACTCTTCATCTTGTCCTGCGTCTCCGTGGTGGTAT 157710 >seq633 Length=42484 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| | || ||||| || || || ||||| Sbjct 35088 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 35029 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || |||||||| || || || || || || || Sbjct 35028 GACACTATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAG 34969 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || ||||| || | ||| | |||||||||||| Sbjct 34968 CAGCGCCTGATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGCACCCTCTCCGATTACAAC 34909 Query 27168 ATTCAAAAGGAG 27179 || || |||||| Sbjct 34908 ATCCAGAAGGAG 34897 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||||||| | || || || || || || | || Sbjct 35369 CATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCCTC 35310 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | ||||| || || || ||||| |||||||| || ||||| || Sbjct 35309 GGATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCA 35250 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||| || || | || ||| | ||| | || |||||||| Sbjct 35249 GCAGCGTCTCATCTTCGCCGGGAAGCAGCTTGAGGACGGGCGCACCCTCTCGGATTACAA 35190 Query 27167 CATTCAAAAGGAGTCGACC 27185 |||||| |||||||| ||| Sbjct 35189 CATTCAGAAGGAGTCTACC 35171 >seq145 Length=336 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| | || ||||| || || || |||| Sbjct 280 ATGCAGATCTTCGTCAAGACCTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCGTCG 221 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| || ||||| || ||||| || Sbjct 220 GACACGATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 161 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || ||| | ||| | || ||||||||| Sbjct 160 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGTACCCTCTCGGATTACAAC 101 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | || | || | ||| | || || ||||| Sbjct 100 ATCCAGAAGGAGTCGACGCTGCACCTTGTCCTCCGTCTCCGCGGCGGCAT 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434889472489920