Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4520 93.3 4e-14 seq633 93.3 4e-14 seq145 91.5 1e-13 >seq4520 Length=427429 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || ||||||| | || || |||| |||||||| ||||| ||||| Sbjct 157900 CTCCTTCTGAATGTTGTAATCGGACAACGTCCGGCCGTCCTCAAGCTGCTTGCCGGCAAA 157841 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCG 39211 || | ||||||||||| | ||| | | ||| |||||| ||| | | || |||| || Sbjct 157840 GATCAAGCGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCC-TGAATCTTTGCCTTGA-CG 157783 Query 39212 TCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | | | |||||| |||||| || || | ||||| | || || |||| ||| || Sbjct 157782 TTGTCGATGGTATCGGACGACTCGACCTCAAGGGTGATCGTCTTGCCGGTCAACGTCTTC 157723 Query 39271 ACAAAGATTTGCAT 39284 || ||||||||||| Sbjct 157722 ACGAAGATTTGCAT 157709 >seq633 Length=42484 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || |||||||| || || || || ||||||| || || || | || || | ||| Sbjct 34885 ATGGAGGGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCCAACTG 34944 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||||||||| || || ||||||||||| | || | | ||| ||||| ||| || Sbjct 34945 CTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTT 35004 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | |||| ||| | | | || ||| |||||| || || | ||||| | || || | Sbjct 35005 CGCCTTGA-CGTTGTCGATAGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGG 35063 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || |||||||| ||||| Sbjct 35064 TCAAGGTCTTGACAAAGATCTGCAT 35088 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || |||||||| || || || || || || | || || || |||| |||||||| Sbjct 34550 TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCAAGCTGC 34609 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||| | || | | ||| |||||| ||| ||| Sbjct 34610 TTGCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTC 34669 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | | | | ||| || ||||| || |||| |||||| | || ||||| Sbjct 34670 GCCTTCACGTTATCAATCGTGTCCGAGGACTCAACCTCCAACGTGATCGTCTTGCCCGTG 34729 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| ||||| Sbjct 34730 AGCGTCTTGACGAAGATCTGCAT 34752 >seq145 Length=336 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || ||||| | || || || |||| |||||||| Sbjct 78 TGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTACGGCCGTCCTCAAGCTGC 137 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||||| || | || ||| |||||| ||| ||| Sbjct 138 TTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTTC 197 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | ||| || |||||| || || | ||||| | || |||||| Sbjct 198 GCCTTGACATTGTCGATCGTGTCCGACGACTCGACCTCGAGAGTGATCGTCTTCCCCGTC 257 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 | || || || ||||| ||||| Sbjct 258 AAGGTCTTGACGAAGATCTGCAT 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429517744102073