Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4520 104 2e-17 seq633 89.7 3e-13 seq145 89.7 3e-13 >seq4520 Length=427429 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || || || ||||| ||||| ||||| || | Sbjct 157991 ATGCAGATTTTCGTCAAGACGTTGACTGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 158050 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| || ||||| || ||| | ||||| || ||| Sbjct 158051 GACACGATCGACAACGTCAAGGCAAAGATCCAAGACAAGGAGGGTATCCCGCCCGACCAA 158110 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || |||| || | |||||| | ||||||||| Sbjct 158111 CAGCGTCTTATCTTCGCCGGCAAGCAGTTGGAGGATGGTCGCACTCTTTCGGATTACAAC 158170 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 158171 ATCCAAAAGGAGTCGAC 158187 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||||||| || |||||||| ||||| || || || | Sbjct 157481 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCTTCA 157540 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | || || || || Sbjct 157541 GACACCATCGACAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCA 157599 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || ||||||||||| || || || || | || || | ||| ||||| Sbjct 157600 GCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAA 157659 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 157660 CATCCAAAAGGAGTCGAC 157677 >seq633 Length=42484 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| ||||| || || ||| || Sbjct 35368 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCCTCG 35309 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || || ||||| ||||| | || || || || Sbjct 35308 GATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 35249 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || || || || |||| ||||| | ||||||||| Sbjct 35248 CAGCGTCTCATCTTCGCCGGGAAGCAGCTTGAGGACGGGCGCACCCTCTCGGATTACAAC 35189 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 35188 ATTCAGAAGGAGTCTAC 35172 >seq145 Length=336 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | ||||| || |||||||||||||| || || || || Sbjct 280 ATGCAGATCTTCGTCAAGACCTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCGTCG 221 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | ||||| || || Sbjct 220 GACACGATCGACAATGTCAAGGC-GAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCA 162 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || ||||| || || || |||| || || | |||||||| Sbjct 161 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGTACCCTCTCGGATTACAA 102 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 101 CATCCAGAAGGAGTCGAC 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337987680183068