Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4520 194 4e-44 seq633 188 1e-42 seq145 167 5e-36 seq3662 104 5e-17 seq905 104 5e-17 seq2370 98.7 2e-15 >seq4520 Length=427429 Score = 194 bits (214), Expect = 4e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | || || |||||||||||||| || | | Sbjct 158217 CCACCGCGCAGGCGGAGGACGAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGAA 158158 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| | || || ||||| ||||| | ||| |||||||| ||| Sbjct 158157 AGAGTGCGACCATCCTCCAACTGCTTGCCGGCGAAGATAAGACGCTGTTGGTCGGGCGGG 158098 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||||||||||||||| || ||| | ||||| ||||| |||| || || Sbjct 158097 ATACCCTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGACTCAACC 158038 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 158037 TCGAGGGTGATGGTCTTGCCAGTCAACGTCTTGACGAAAATCTGCAT 157991 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | || || ||||||||||||||||| | Sbjct 157708 ACCACCACGGAGACGCAGGACAAGATGAAGAGTCGACTCCTTTTGGATGTTGTAGTCGGA 157649 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || ||||||||||| | |||||| ||||| || Sbjct 157648 GAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGAGG 157589 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || || | ||||| ||||| |||| ||||| Sbjct 157588 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAAGACTCGAC 157529 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||| | ||||| || || |||||||| Sbjct 157528 CTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 157481 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || |||||||| || | | ||| ||||| ||||| || || || ||||||||| Sbjct 157899 TCCTTCTGAATGTTGTAATCGGACAACGTCCGGCCGTCCTCAAGCTGCTTGCCGGCAAAG 157840 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || ||||| ||||| ||||||||||| || |||||||| || ||| | Sbjct 157839 ATCAAGCGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGAATCTTTGCCTTGACGTTG 157780 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || || || | ||||| || || ||||||||||| || ||||| ||||| ||| Sbjct 157779 TCGATGGTATCGGACGACTCGACCTCAAGGGTGATCGTCTTGCCGGTCAACGTCTTCACG 157720 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 157719 AAGATTTGCAT 157709 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||||| |||||||| || ||||| | || || || || ||| Sbjct 158409 TCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGACCGTCCTCCAACTGCTTTCCAGCGAAG 158350 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || || || ||||| |||||||| || |||||||| || || ||| | Sbjct 158349 ATAAGCCGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTG 158290 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | || || || || ||||||||||| || || | ||||| ||| Sbjct 158289 TCGATCGTGTCTGAGGACTCAACCTCTAGCGTGATCGTCTTCCCTGTGAGCGTCTTGACG 158230 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 158229 AAAATCTGCAT 158219 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || |||||| | ||||| ||||| || | ||||| || Sbjct 157298 CCCTCCTTGTCCTGGATCTTGGCCTTTACGTTGTCGATGGTGTCAGAGGACTCGACCTCA 157239 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||| || || | ||||||||||| |||||||| Sbjct 157238 AGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 157195 >seq633 Length=42484 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| |||||||| || || || | ||||| || || |||||||||||||| | Sbjct 34526 CCACCACGGAGGCGAAGGACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 34585 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||| | || || |||||| || Sbjct 34586 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGG 34645 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| || || ||| |||| || |||||||| | || || Sbjct 34646 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCAATCGTGTCCGAGGACTCAACC 34705 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 34706 TCCAACGTGATCGTCTTGCCCGTGAGCGTCTTGACGAAGATCTGCAT 34752 Score = 183 bits (202), Expect = 6e-41 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282894 AGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGT 282953 ||||| | ||||| || || ||||||||||| || | || |||||||||||||| | Sbjct 34883 AGATGGAGGGTGCTCTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCCAAC 34942 Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || |||||||||| || || ||||| |||||||||||||||||||||||| Sbjct 34943 TGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATC 35002 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || || || ||| | ||||||||||| || | ||||| ||||||||||| ||||| || Sbjct 35003 TTCGCCTTGACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCG 35062 Query 283074 GTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || || |||||||| Sbjct 35063 GTCAAGGTCTTGACAAAGATCTGCAT 35088 >seq145 Length=336 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || || || || | ||| || || ||||||||||| || | Sbjct 54 CCGCCGCGGAGACGGAGGACAAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGAG 113 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || || || ||||| | || || ||||| |||| Sbjct 114 AGGGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGCGGA 173 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || || | ||||| |||||||| | ||||| Sbjct 174 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATCGTGTCCGACGACTCGACC 233 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||||||||| |||||||| ||||| ||||| |||||||| Sbjct 234 TCGAGAGTGATCGTCTTCCCCGTCAAGGTCTTGACGAAGATCTGCAT 280 >seq3662 Length=107388 Score = 104 bits (114), Expect = 5e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || || || ||||| || | |||||| | ||||| ||||| || || || |||||| | Sbjct 78320 CTCATTGGTATGAACGCCAAGCTCATGCGCCAATACATCGAGTTTGTGGCGGATCGTCTC 78379 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 ||||||| || || |||||| || ||| || ||||||||||| || ||||| Sbjct 78380 CTCGTGGCCCTCGGCGGCGAGAAGCACTACAACGTCACGAACCCCTTCGACTTCATGGAC 78439 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAG 230401 | || || |||||||| || || |||||||| || ||||| || ||| || || ||| Sbjct 78440 ATGATCTCGCTCCAGGGCAAGACGAACTTCTTTGAGAAGCGCGTGTCCGACTACTCGAAG 78499 Query 230402 GCCCGGTGT 230410 | ||||||| Sbjct 78500 G-CCGGTGT 78507 >seq905 Length=41247 Score = 104 bits (114), Expect = 5e-17 Identities = 93/116 (80%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 |||||||||||||||||||| || || || | ||||| |||||||| | || || ||| Sbjct 18859 CCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCG 18800 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACAA 283111 || ||||| ||||| ||||| | ||||| ||||| |||||||||| ||||||| Sbjct 18799 AGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATTT--CTATACAA 18746 >seq2370 Length=61181 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || ||| | ||||| ||||| |||| || || || Sbjct 54530 CCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCA 54471 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 || ||||| ||||| ||||| | ||||| ||||| |||||||| |||| Sbjct 54470 AGGGTGATAGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCATCTTCA 54422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046667838227934