Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4520 159 8e-34 seq633 150 4e-31 >seq4520 Length=427429 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || |||||||| |||||||| || |||||| Sbjct 157484 CAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCTTCAGAC 157543 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || |||||||| ||||||||| Sbjct 157544 ACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAA 157603 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| ||||| | || || |||| || ||| || Sbjct 157604 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAACATC 157663 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || |||||||| Sbjct 157664 CAAAAGGAGTCGACTCTTCATCTTGT 157689 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || || || || |||||||||||||| || || ||| Sbjct 157994 CAGATTTTCGTCAAGACGTTGACTGGCAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 158053 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||| || ||||| || || ||||| || ||||| || Sbjct 158054 ACGATCGACAACGTCAAGGCAAAGATCCAAGACAAGGAGGGTATCCCGCCCGACCAACAG 158113 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||| | || ||||| | |||||| | ||||| ||| || Sbjct 158114 CGTCTTATCTTCGCCGGCAAGCAGTTGGAGGATGGTCGCACTCTTTCGGATTACAACATC 158173 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || || || || Sbjct 158174 CAAAAGGAGTCGACTCTTCACCTCGT 158199 Score = 136 bits (150), Expect = 1e-26 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || | || || || ||||||||||| ||||| || || || Sbjct 157712 CAAATCTTCGTGAAGACGTTGACCGGCAAGACGATCACCCTTGAGGTCGAGTCGTCCGAT 157771 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||||||||| || || || || ||||||||||| Sbjct 157772 ACCATCGACAACGTCAAGGCAAAGATTCAGGACAAGGAGGGGATTCCCCCGGACCAGCAG 157831 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || ||||| || || || |||| | ||||||| ||| | Sbjct 157832 CGCTTGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGGACGTTGTCCGATTACAACATT 157891 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || || || || Sbjct 157892 CAGAAGGAGTCTACCCTTCACCT 157914 Score = 136 bits (150), Expect = 1e-26 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || |||||||| || |||||||| || ||||| || ||||||| Sbjct 158222 CAGATTTTCGTCAAGACGCTCACAGGGAAGACGATCACGCTAGAGGTTGAGTCCTCAGAC 158281 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| ||||| || || || || || ||||| ||||| Sbjct 158282 ACGATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCAGCAG 158341 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| ||| | || || || | || || | || || ||| || Sbjct 158342 CGGCTTATCTTCGCTGGAAAGCAGTTGGAGGACGGTCGCACGCTCTCTGACTACAACATC 158401 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 158402 CAGAAGGAGTCTACGCTCCACCTTG 158426 >seq633 Length=42484 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || ||||| |||||||| || ||| || Sbjct 35365 CAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACGCTCGAGGTCGAGTCCTCGGAT 35306 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| ||||| |||||||| |||||||| Sbjct 35305 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAGCAG 35246 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || | ||||| ||| | Sbjct 35245 CGTCTCATCTTCGCCGGGAAGCAGCTTGAGGACGGGCGCACCCTCTCGGATTACAACATT 35186 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || ||||| || Sbjct 35185 CAGAAGGAGTCTACCCTGCACCT 35163 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||| | ||||| || ||| ||| Sbjct 34749 CAGATCTTCGTCAAGACGCTCACGGGCAAGACGATCACGTTGGAGGTTGAGTCCTCGGAC 34690 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| |||||||| || || |||||||| |||||||| Sbjct 34689 ACGATTGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAG 34630 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || | || || ||| || Sbjct 34629 CGGCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACGCTGTCGGACTACAACATC 34570 Query 178104 CAAAAAGA 178111 || || || Sbjct 34569 CAGAAGGA 34562 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || ||||| |||||||| || || ||| Sbjct 35085 CAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGAC 35026 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| || || || |||||||||||||| Sbjct 35025 ACTATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAGCAG 34966 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||| | || ||||| | || || ||||||| ||| || Sbjct 34965 CGCCTGATCTTTGCGGGCAAGCAGTTGGAGGATGGCCGCACCCTCTCCGATTACAACATC 34906 Query 178104 CAAAAAGA 178111 || || || Sbjct 34905 CAGAAGGA 34898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203649135249274