Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1532 138 1e-27 >seq1532 Length=168184 Score = 138 bits (152), Expect = 1e-27 Identities = 345/522 (66%), Gaps = 3/522 (1%) Strand=Plus/Minus Query 16999 GATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATAT 17058 ||| || ||||| || || || | ||| |||||| || || ||||| | ||| || || Sbjct 155459 GATCAGCTCGTTGGAGAAGGTGAGCCCAGGCATCAAGCCACGCTTCTTGAGCCAGAAGAT 155400 Query 17059 CGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTC 17118 | |||||| || || || ||||| || |||||||| | || || || || | || || Sbjct 155399 GGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACAGCGGCGAAGGCAATGAGACGCTC 155340 Query 17119 GGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTAT 17178 | | ||| | || |||| ||||| | | |||| ||||| || | ||| || Sbjct 155339 AGAGAACGCAGACTCCTTGTCGGAGATCCAGCGCAGGGCCCAGTCGGCCTTCTTCTTGAT 155280 Query 17179 GCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATA 17238 |||| || || || || || | || | || ||||| |||| | || || Sbjct 155279 GCAAGGAATGGTATCGATAGCATCGAACAGGCGTTCGCGCTCCTGGGGGTCCTTGATGTA 155220 Query 17239 CGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCC 17298 || |||||||| || ||| | |||||||| ||||||||||| ||||| || || Sbjct 155219 GGTGTCGATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCC 155160 Query 17299 GTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTC 17358 || ||||| || || || || ||| || || | |||| || || | ||||| || Sbjct 155159 ATAGAAGCAGCGAGCCTCAGCAGCTTGGACCTCGTTGGAGAACCGCTCGACGAGATTCTC 155100 Query 17359 GTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTC 17418 ||| ||||||||||| |||||||| ||||| | | ||| | ||| | || Sbjct 155099 GTTGACGATGCCGTCCGAGGCGGCGAAGAACGCGAGAACGTGCGAGACGAAGTGGCGCTC 155040 Query 17419 GTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGG 17475 ||| |||| | | | |||||| | | || ||||| | ||||| || || | Sbjct 155039 GTCATTGGTGAGACGGTTGTTCCAGTCGTGCATGTCCTTGGAGAGATCCATCTCCTCCGC 154980 Query 17476 GGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 ||||||||| ||| | ||||| || ||||| | |||||| Sbjct 154979 GGTCCAAAAGGACGCCTCAGCCTTCTTGTACATCTGCCAAAT 154938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517534401607080