Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq590 168 8e-37 >seq590 Length=36723 Score = 168 bits (186), Expect = 8e-37 Identities = 249/347 (72%), Gaps = 8/347 (2%) Strand=Plus/Plus Query 145924 GCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGG--GGTTCCT-CTTGATCTCC 145980 || |||||||| |||| ||||| || | | || |||| || || | ||| |||| Sbjct 25447 GCGGGGTTCCACGCGGAGAGGATGA---TGCGGCGGTCGGTGGGGTCGTGCTTTATCTTG 25503 Query 145981 CCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACG 146040 | || ||| ||||||||| ||||||| ||| ||| || | | | ||||| | Sbjct 25504 CGAATGCACTCCTGGAGCTGGTCAACGCCCTTGCCCGTGTATTCCGCGTCGCAGTCCTCA 25563 Query 146041 TACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTC-CCCGGGCTC 146099 |||| ||| || ||||||| ||||||||| |||||||||||||| ||||| |||| || Sbjct 25564 TACGAGGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGCCCGAGGTCGCCCGCGC-G 25622 Query 146100 CCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTT 146159 || ||| ||||| ||| | ||||||| ||| ||| ||||| ||||||||||||| Sbjct 25623 CCGGTGGCCCAGGCCGCGCTTCTCGAGGAACTCCTTGGAGCCGTTACCGTCCCAGATCTT 25682 Query 146160 GACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTC 146219 || |||| | |||||||||| ||||||| ||| | || | ||||||||| | ||| Sbjct 25683 GATGCCCTTGGCGGAGAGCTGCGTGGAGTCGGTGCAGCCTTGAACGAACCAGAGTAACTC 25742 Query 146220 TTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 |||| || || | | |||| | || || || || ||||||| Sbjct 25743 CTCGACGATGCCGCGCAGGAAGGTGCGTTTTGTAGTGAGGAGGGGGA 25789 Score = 123 bits (136), Expect = 3e-23 Identities = 224/321 (70%), Gaps = 14/321 (4%) Strand=Plus/Plus Query 145545 CATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCCGCCCT 145604 ||||| ||| | ||| || |||||||| ||| ||||||| |||||||| || Sbjct 24985 CATCTTCATAGCAATGCTCGGGTGGGGGTCGTAACCCTCCACGATGAAGTCCTCGCTCCG 25044 Query 145605 GAAGTCATCTATGTCCTCCACC---CGCCTCAGGATCCTGAGCCTGGGAAAGGGCCGGGG 145661 ||||||||| ||| ||| || ||| | ||| ||| |||| || |||| || Sbjct 25045 GAAGTCATCGATGCCCTTGACTTTGCGCGCCC--ATCGC-AGCTTGGGGAATGGCCTTGG 25101 Query 145662 GCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCC 145720 ||| | || ||||| || || | || ||||||| | |||||||||||||||| | Sbjct 25102 -CTCGCGCTCGAGCTGCGTTTTGAGCGCGTCGACGTGGTCGCGGTAGACGTGCGCGTCTC 25160 Query 145721 CCAGGACGTGGATGAAGTCCCCGGGCTCGAGGC---CCGTGAGGTGGGCGACCATGTAGG 145777 | || ||||||| | || || || | | |||| ||| |||||||||| | Sbjct 25161 CGAGC---TGGATGATCAGCTCGTGCGGGACGGTATCGGTGACGTGCGCGACCATGTGCG 25217 Query 145778 TCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCT 145837 | || |||| |||| || ||||||||||| | || ||||||| ||| | ||||||| Sbjct 25218 TGAGGAGGGCGTAGGACGCAATGTTGAAGGGGATTCCGAGCCCCAGGTCGGCGGAGCGCT 25277 Query 145838 GGTACAGCTGGCAGGAGAGCT 145858 |||||| | ||||||||||| Sbjct 25278 GGTACATCAAGCAGGAGAGCT 25298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590064032213240