Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq561 138 1e-27 seq1277 127 2e-24 seq318 95.1 1e-14 seq722 89.7 4e-13 >seq561 Length=237278 Score = 138 bits (152), Expect = 1e-27 Identities = 158/211 (75%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587 ||||||| || | || ||||| || || |||||||| ||| || ||||| ||||| Sbjct 98103 CACCAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCT 98162 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | ||||| ||||||||| |||||||||||||||| || || || |||||||||||||| Sbjct 98163 CAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCT 98222 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | |||| |||||| | ||||||||| | ||| | || | Sbjct 98223 GGATCTTCGCCTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCT 98282 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || ||||| |||||||| Sbjct 98283 TGCCGGTCAAGGTCTTGACAAAGATCTGCAT 98313 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| || | |||||| ||||| Sbjct 97823 CACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTC 97882 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| || ||||||||||| ||||| || ||||||||||| Sbjct 97883 GAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTG 97942 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| |||||| | ||||||||||| ||| | ||| || Sbjct 97943 AATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTT 98002 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 98003 ACCCGTCAGGGTCTTGACGAAGATCTGCAT 98032 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118529 CACCAA-GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587 |||||| ||| | || ||||| || || |||||||| ||| || ||| || ||| | Sbjct 92829 CACCAATGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTTCGGCCATCTT 92888 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 ||||||| || |||||| ||||||||||||| | || | ||||||||||||| Sbjct 92889 CGAGCTGCTTGCCAGCGAAGATGAGACGCTGGGTGTTTGGCGCAGTGCCCTCCTTGTCAT 92948 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| ||| || || | ||||| ||||| | | | |||| | ||| | || | Sbjct 92949 GAATCTTTGCCTTCACGTTTTCGATAGTGTCGGACGACAGGGCCTCCAGGGTGATGGTCT 93008 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTG 118735 ||||||||| || || || || ||||| Sbjct 93009 TGCCGGTCACGGTCTTGACGAAGATCTG 93036 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| || | ||||| ||||| | ||| || || ||| | Sbjct 97613 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAA 97672 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| || |||||||| ||||| || || ||||||||||| || || || || | Sbjct 97673 GATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 97732 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||||| | ||| ||||| | || | ||| ||||| ||||| || || || Sbjct 97733 GTCGATCGTGTCCGAGGACTCAACCTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTGAC 97792 Query 118727 AAAAATCTGCATG 118739 || ||||||||| Sbjct 97793 GAAGATCTGCATG 97805 >seq1277 Length=70460 Score = 127 bits (140), Expect = 2e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | |||||| |||||| ||||| Sbjct 15820 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCCTCAAGCTG 15879 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||||||||| |||||||| || || |||||||||||||| || || Sbjct 15880 CTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 15939 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||||| ||| ||||||| ||| | ||| ||||| || Sbjct 15940 CGCCTTCACATTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTCTTGCCCGT 15999 Query 118715 CAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || || ||||||||| || Sbjct 16000 GAGGGTCTTGACGAAGATCTGCATGCCT 16027 Score = 120 bits (132), Expect = 3e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587 ||||||| || | |||||||| || ||||||||||| || || || | ||||| Sbjct 15585 CACCAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCT 15644 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 ||||||| || |||||| |||| | ||||||||| ||||| || |||||||||||||| Sbjct 15645 CGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCT 15704 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | |||| ||| || | ||| ||||||| ||| | || | Sbjct 15705 GGATCTTCGCCTTCACGTTGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCT 15764 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||| || || || || |||||||| Sbjct 15765 TGCCGGTCAACGTCTTCACGAAGATCTGCAT 15795 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118531 CCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 ||| ||||| || ||||| || || |||||||| ||| | ||||| ||||| | Sbjct 15080 CCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCA 15139 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||| || ||||| |||||||||||||||| |||||||| ||||||||||| || || Sbjct 15140 ACTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAA 15199 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | |||| ||||| | | ||| ||||| | || | ||| || | Sbjct 15200 TCTTCGCCTTCACGTTGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCC 15259 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| || || || || || ||||||||| Sbjct 15260 CGGTGAGCGTCTTGACGAAGATCTGCATG 15288 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||||||||| || |||||| ||||| | ||| || || Sbjct 15319 GTGGACTCCTTCTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCCAACTGCTTGCCG 15378 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||| || || || || |||||||||||| || || || Sbjct 15379 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTCGCCTTG 15438 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||||||||||| ||| | || || || |||| || Sbjct 15439 ACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTCTTCCCCGTCAACGTC 15498 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 15499 TTGACGAAGATCTGCAT 15515 >seq318 Length=85141 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||||| |||||||| || || |||||||| ||||| | ||||| ||| Sbjct 71670 CAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATC 71729 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGC 118635 ||||||||| || || ||| |||| || |||||||| ||||| || |||| Sbjct 71730 CTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATGC 71779 >seq722 Length=257698 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || ||||||||||| ||||| | || || ||||||||||| Sbjct 226023 GTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGCTGAGGGTACGGCCGTCCTCGAGCTG 226082 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || |||||| |||| ||||||||||| ||||| || |||| || |||||| Sbjct 226083 CTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCTATCACGGTCTGT 226136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821247669852