Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq561 116 4e-21 seq1277 107 2e-18 >seq561 Length=237278 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || | || || || |||| || | |||||| || Sbjct 97608 GTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAACTGCTTGCCG 97667 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| || || ||||||||||||| ||| | | |||||||||| ||| || || Sbjct 97668 GCGAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTC 97727 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | |||||| || || || || | |||||| || |||||||| ||||| Sbjct 97728 A-CGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTGATCGTCTTGCCCGTCAGCGT 97786 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| || ||||| ||||| Sbjct 97787 CTTGACGAAGATCTGCAT 97804 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || |||||||| |||||||| Sbjct 98122 CTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 98181 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 98182 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 98241 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||| || || || | |||||||| ||||| || | ||||| || Sbjct 98242 GTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 98301 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 98302 AAAGATCTGCAT 98313 >seq1277 Length=70460 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || | |||||| ||||| || Sbjct 15096 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCAGCAAA 15155 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | || |||||| ||| ||| | || | | ||| Sbjct 15156 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCC-TGAATCTTCGCCTTCACGT 15214 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| || ||||| || | |||||| || || || || |||||||| | Sbjct 15215 TGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCGGTGAGCGTCTTGA 15274 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 15275 CGAAGATCTGCAT 15287 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | |||||| || |||| || | |||||| || ||||| Sbjct 15324 CTCCTTCTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCGAA 15383 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 15384 GATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTCGCCTTGA-CGT 15442 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| || || || |||| || ||||| || ||||| | |||||| | Sbjct 15443 TGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTCTTCCCCGTCAACGTCTTGA 15502 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 15503 CGAAGATCTGCAT 15515 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | || |||| | || || |||||||| |||||||| Sbjct 15604 CTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCTCGAGCTGCTTGCCAGCGAA 15663 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||||| ||| | || |||||||||| ||| || || | ||| Sbjct 15664 GATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 15722 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| || || || |||| || ||||| ||||| || | |||||| | Sbjct 15723 TGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAACGTCTTCA 15782 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 15783 CGAAGATCTGCAT 15795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571805227296680