Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq561 134 9e-27 seq1277 129 4e-25 seq318 86.0 4e-12 >seq561 Length=237278 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||| || ||||| | || || || ||||| ||||||||||| || Sbjct 97578 CCACCGCGGAGACGCAGGACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 97637 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||||||||||||| ||||| || || |||||||||||| || Sbjct 97638 AGCGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 97697 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | |||| || | || || || Sbjct 97698 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACC 97757 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || ||||| || || || || || ||||||||||| Sbjct 97758 TCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 97804 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| ||||||||||||||| || || || | || || | |||||| || ||||| Sbjct 98123 TCCTTCTGGATGTTGTAGTCGGACAAGGTG-CGACCATCCTCAAGCTGCTTTCCAGCGAA 98181 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||||||||| ||| | || ||||||||| ||||| ||| | || Sbjct 98182 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATT 98241 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| ||| ||||| || | |||||||| |||||||| | || || || Sbjct 98242 GTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 98301 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 98302 AAAGATCTGCAT 98313 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||||| ||||| | || || ||||| ||||||||||| || Sbjct 97806 CCGCCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 97865 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || || |||||||| || || Sbjct 97866 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGATCCGGAGGG 97925 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | |||| ||| ||||| Sbjct 97926 ATACCCTCCTTGTCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 97985 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || || || || || || ||||||||||| Sbjct 97986 TCGAGGGTGATCGTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 98032 >seq1277 Length=70460 Score = 129 bits (142), Expect = 4e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| ||| ||| |||| ||||||||||| || || || Sbjct 15097 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCAGCAAAG 15156 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||||||| || | || |||||| || ||||| ||| | | | Sbjct 15157 ATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTTG 15216 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| |||| || || || |||| |||||| || || |||||||| || || || Sbjct 15217 TCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCGGTGAGCGTCTTGACG 15276 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 15277 AAGATCTGCAT 15287 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | || || ||||| | ||| || ||||| |||||||| || ||| Sbjct 15289 CCGCCGCGCAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAC 15348 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| |||||||||||||| ||||| || | ||||||||||| ||| Sbjct 15349 AGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 15408 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | |||| |||| || ||||| Sbjct 15409 ATACCCTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACC 15468 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| || || || | || || || ||||||||||| Sbjct 15469 TCGAGGGTAATGGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 15515 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||| || ||||| | || || ||||| ||||||||||| || Sbjct 15797 CCGCCACGAAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 15856 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||||||| ||||| ||||| || ||||| || ||| Sbjct 15857 AGGGTGCGCCCATCCTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGG 15916 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | || | ||| || || Sbjct 15917 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCAACC 15976 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| ||||| || || || ||||||||||| Sbjct 15977 TCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 16023 Score = 102 bits (112), Expect = 5e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 34180 CACCA-GGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGT 34238 ||||| |||| | ||| || ||||| ||||||||||| |||| | | | | || | Sbjct 15585 CACCAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCT 15644 Query 34239 CCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGG 34298 | | ||||||||| ||||| || | |||||||||||| || | || ||||||||| Sbjct 15645 CGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCT 15704 Query 34299 CTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTT 34358 ||||| ||| | | | | || | ||||| || || || || | || ||||| | Sbjct 15705 GGATCTTCGCCTTCACGTTGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCT 15764 Query 34359 TGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||| | || ||||| ||||||||||| Sbjct 15765 TGCCGGTCAACGTCTTCACGAAGATCTGCAT 15795 >seq318 Length=85141 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | |||| || ||||| |||||||||||| Sbjct 71656 CCACCACGCAGACGCAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTG 71715 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| || || |||||||||||| ||| Sbjct 71716 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 71775 Query 34283 ACGCT 34287 | ||| Sbjct 71776 ATGCT 71780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323065184291360