Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq865 96.9 7e-15 >seq865 Length=134895 Score = 96.9 bits (106), Expect = 7e-15 Identities = 229/344 (67%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| ||||||||| || ||| || || ||||| || || |||| ||| || Sbjct 114883 CTTTGGTTTCAAAACCCTCGAGCGTTCATACCTCCTGAAGATCAATGGACGCGTCGCTGA 114824 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 || ||||| || | ||||||||||||||||| || ||| | || || || Sbjct 114823 GCGGCCACAGCATCTGATCATGCGAGTGGCTGTCGGCATACACGGCGCCGATATCGAC-- 114766 Query 248946 CGTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACG 249003 ||||| ||||||| ||| | ||| ||| || | | || ||||| | || || Sbjct 114765 CGTGCCATCGAGACCTACCACCTCATGTCTGAGCGGTACTTCACCCATGCTTCGCCAACT 114706 Query 249004 CTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAA 249063 | |||||||| ||||| |||| ||||||||||||||||| || | | ||| | Sbjct 114705 TTGTTCAACGCTGGTACACCCAACCCCCAGCTGAGCTCGTGCTTCCTGGTGTCGATGAAG 114646 Query 249064 GACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTC 249123 ||||| || |||| |||||||| ||||| || | ||||| || ||| | Sbjct 114645 GACGATTCCATCGAGGGCATTTACTCGACGCTCAAGGACTGCGCGAACATCAGTAAGACC 114586 Query 249124 GCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGG 249167 || || || || ||| || | | ||||||||| || | ||| Sbjct 114585 GCTGGTGGCATTGGTATCAACATTCACAACATCCGCGCCACGGG 114542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073742585539008