Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1532 192 5e-44 seq865 156 4e-33 seq636 123 2e-23 seq1277 111 1e-19 seq561 107 2e-18 >seq1532 Length=168184 Score = 192 bits (212), Expect = 5e-44 Identities = 384/565 (68%), Gaps = 13/565 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| | || |||| ||||| ||||| ||||| || | |||| Sbjct 153581 ATATGGCAGATGTACAAGACCGCCCAAGCGTCGTTCTGGACGGTCGAGGAGATTAACCTC 153522 Query 57630 TCTAAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || | ||||| | || ||| || || || || ||| || | || || Sbjct 153521 TCATACGATCTCATGGACTGGAGCGACAAGCTGAACGATAACGAGCGACACTTCATCTCC 153462 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || |||||||| || || || || || ||||||||| | ||||| | Sbjct 153461 TACGTGCTCGCCTTCTTCGCCGCTTCAGACGGCATAGTCAACGAGAATCTCGTCGAGCGG 153402 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | || ||||| | ||||||| | ||||| ||||| || ||| | || Sbjct 153401 TTCTCCAACGAGGTGCAGGCCGCGGAGGCCCGCTGCTTCTACGGCTTCCAAATCATGATG 153342 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 |||||||| || || || | || ||||| |||||||| || ||| | ||| || Sbjct 153341 GAAAACGTACACTCCGAGACATACTCGCTCCTCATCGACACCTACATCCGCGACCCCGCA 153282 Query 57867 GAGAAACGTAGAC-TGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 || | || || | ||| |||||||||| || || || ||| ||||||||||| Sbjct 153281 GA-ACGCGCCTACCTCTTCGACGCGATCGACACCATTCCGTGCATCAAGAAGAAGGCAGA 153223 Query 57926 GTGGTCAATCAAATGGATAAAA----AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 ||| | | ||||| | ||||| || | ||||||||| |||| ||| Sbjct 153222 CTGGGCGTTGCGCTGGATCGCAGACGAGCGCTCCGTC----TTCGCCGAGCGGCTCGTCG 153167 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 |||||||||||||||| || || ||||| || ||| ||| || || || || ||| | | Sbjct 153166 CGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTCA 153107 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||| ||||| || ||||| ||| ||||||| |||||| | || |||||||||| Sbjct 153106 AGAAGCGCGGACTCATGCCGGGCTTGACGTTCTCGAACGAGCTCATCAGCCGCGACGAGG 153047 Query 58102 GTCTCCATACTGATTTTGCGTGCCT 58126 | | || || || |||||||| || Sbjct 153046 GCATGCACACCGACTTTGCGTGTCT 153022 >seq865 Length=134895 Score = 156 bits (172), Expect = 4e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 |||||||| |||||||| || ||||||||||| |||||||| || || |||||||||||| Sbjct 114253 AAAAGATCGGGTATCCAGAGCGCGTAGAACAGATCGCGGGCACGGACTTCCTCTTTGCCG 114312 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| || ||| | || || || ||||| || ||||| ||||| ||||| | | Sbjct 114313 TGGTTCTTGCGCAGATCAATGAACTCGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATG 114372 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || || || | ||| || || ||||||||||||||||| ||||| | ||| Sbjct 114373 GCGAATGCTCCGGGGCGCTTGTTACCCCCCTGATCGACGTAACGAGCCGTCGCATCGTAT 114432 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGA 23565 || | ||||| || |||| ||||| || Sbjct 114433 ACGCGAAGCATAGGGACGATCCCGTTCGA 114461 Score = 118 bits (130), Expect = 9e-22 Identities = 253/377 (67%), Gaps = 11/377 (3%) Strand=Plus/Plus Query 22505 GTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATC 22564 ||| | || ||||| | || ||||| |||| |||||| ||||| ||||| |||||| Sbjct 113305 GTGTAAGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGACTCGTCGAGGCGGTAGGCATC 113364 Query 22565 GGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGAC 22624 || || | || | ||| || | | ||||||| | || || |||||| ||| | Sbjct 113365 GGGGCAACAAGCAACGAATTACGGAGACCGTGCTGCGCAACCTTCGCCTTGAGGCTCGTC 113424 Query 22625 CAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGA 22684 |||||||| || || | || || | || |||| | ||||| || | | ||| Sbjct 113425 CAGTCCCAGAGGTCCGTAGGAGTGA---TGCCCCAGAGGTCGTACTGGAGCTTGCC---- 113477 Query 22685 CTCG----CCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCA 22740 |||| | |||||||| | |||||| ||||| | || | | || | ||||| Sbjct 113478 CTCGGAGGCGGGGCTGCCCTGGTACGTCTCGTAGGTCCCGAACTGCTGTGCCATCTCGCA 113537 Query 22741 GCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC 22800 ||||||||| | ||| | | || || ||||||||||| | || ||| | | | || Sbjct 113538 GCTCGCCTCGACCGCCGCATGGTAGATGGTCTCGAAGATCTGCTGGTTGAGCTTGCGCGC 113597 Query 22801 GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCC 22860 | |||| ||| | ||||| || | | || |||||| ||||||| || || ||||| Sbjct 113598 CTCAACGCCATCGAAGGGCATCCGAAGCGCCATGAACGCATCCGCCAAGCCTTGCACGCC 113657 Query 22861 TATACCGATCGGTCGGT 22877 | |||||| || |||| Sbjct 113658 CACACCGATGGGACGGT 113674 >seq636 Length=11643 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 |||||||| |||||||| || ||||||||||| |||||||| || || ||||| |||||| Sbjct 7240 AAAAGATCGGGTATCCAGAGCGCGTAGAACAGATCGCGGGCACGGACTTCCTCCTTGCCG 7181 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| || ||| | || || || || || || ||||| ||||| ||||| | | Sbjct 7180 TGGTTCTTGCGCAGATCAATGAACTCGAAGACATCAGCGTGCCAGGGCTCAAGGTAGATG 7121 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517 || || || || || | | ||||| |||||||||||||| Sbjct 7120 GCGAATGCTCCGGGGCGTTCGTTGCCCCCCTGATCGACGTA 7080 >seq1277 Length=70460 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || || ||| |||| ||||| | ||| Sbjct 15795 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCTTCC 15736 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || ||||||||| ||| | |||||||||||| Sbjct 15735 GATACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 15676 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||||||||| ||| | || || | ||| || || || ||| Sbjct 15675 CAGCGTTTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACGTTGTCGGACTACAAC 15616 Query 31373 ATTCAAAAAGAATCGACTCTTCATCT 31398 ||||| || || || || ||||| || Sbjct 15615 ATTCAGAAGGAGTCTACCCTTCACCT 15590 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || || ||| |||| || || | ||| Sbjct 15515 ATGCAGATCTTCGTCAAGACGTTGACGGGGAAGACCATTACCCTCGAGGTCGAGTCTTCC 15456 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || |||||||| || | || || |||||| Sbjct 15455 GACACGATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 15396 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| |||||||| ||| ||| || ||||| ||| Sbjct 15395 CAGCGCTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGACGCACTCTGTCGGATTACAAC 15336 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || |||||||| || || ||| | ||| | ||||| Sbjct 15335 ATCCAGAAGGAGTCCACTCTTCACCTCGTCCTTCGTCTGCGCGGCGG 15289 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || |||||||| | || || || | || Sbjct 15288 CATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACGATCACGCTGGAGGTGGAGTCCTC 15229 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || || || ||| ||||| ||| | || |||||||| Sbjct 15228 CGACACGATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATCCCTCCCGACCA 15169 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| || |||||||| ||| || | ||| || || Sbjct 15168 GCAGCGTCTCATCTTTGCTGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCCGACTACAA 15109 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGG 31400 ||| || || || ||||| || || |||| Sbjct 15108 CATCCAGAAGGAGTCGACGCTCCACCTGG 15080 >seq561 Length=237278 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||||| | || ||||| | || Sbjct 97805 CATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATCACGCTGGAGGTTGAGTCCTC 97746 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || || ||||||||| || | ||||||||||| Sbjct 97745 GGACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCA 97686 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| || || ||||| ||||| |||||||| ||| Sbjct 97685 GCAGCGCCTGATCTTCGCCGGCAAGCAGTTGGAGGAC 97649 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| ||||| || |||||| | || || || ||||| Sbjct 98313 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCC 98254 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | || || |||||| Sbjct 98253 GACACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 98194 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | || || | || || ||| || ||| Sbjct 98193 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTGTCCGACTACAAC 98134 Query 31373 ATTCAAAAAGAATCGACTCTTCATCT 31398 || || || || ||||| ||||| || Sbjct 98133 ATCCAGAAGGAGTCGACCCTTCACCT 98108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756754729520