Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq590 91.5 1e-13 >seq590 Length=36723 Score = 91.5 bits (100), Expect = 1e-13 Identities = 211/313 (67%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATCG-TGGGGCCGCCTGTTAATTAG--- 21220 ||||||||||||||| | | | |||||| || ||| ||||| || ||| | | Sbjct 25447 GCGGGGTTCCACGCGGAGAGGATGATGCGGCGGTCGGTGGGGTCGTGCTTTATCTTGCGA 25506 Query 21221 ATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCT 21280 || ||| | | |||||||| || |||| ||| ||| | |||||| || Sbjct 25507 ATGCACTCCT----GGAGCTGGTCAACGCCCTTGCCCGTGTATTCCGCGTCGCAGTCCTC 25562 Query 21281 GTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCG 21340 ||| || ||||| || | ||||||||| ||||| || ||||| || |||||| |||| Sbjct 25563 ATACGAGGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGCCCGAGGTCGCCCGCGCG 25622 Query 21341 GCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTT 21400 |||| || | ||| || | | | || | ||| |||| ||||||| || || Sbjct 25623 CCGGTGGCCCAGGCCGCGCTTCTCGAGGAACTCCTTGGAGCCGTTACCGTCCCAGATCTT 25682 Query 21401 TACGCCGC-GGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACT 21459 | ||| |||| || || | |||||||||||| |||| | ||||| || |||| Sbjct 25683 GATGCCCTTGGCG-GAGAGCTGCGTGGAGTCGGTGCAGCCTTGAACGAACCAGAGTAACT 25741 Query 21460 CCTCCACGACGCC 21472 |||| |||| ||| Sbjct 25742 CCTCGACGATGCC 25754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056 |||||||| |||| || | ||| |||||||||||| || ||||| || |||| ||| Sbjct 25196 GTGACGTGCGCGACCATGTGCGTGAGGAGGGCGTAGGACGCAATGTTGAAGGGGATTCCG 25255 Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCT 21099 || |||| ||||||||| | |||||||| | |||||| |||| Sbjct 25256 AGCCCCAGGTCGGCGGAGCGCTGGTACATCAAGCAGGAGAGCT 25298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427766975396880