Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1544 84.2 2e-11 >seq1544 Length=70546 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 33575 AGATGGGCGACAAGTTTGCATCGT-TCACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633 |||| ||||||||||| || || |||||| | ||||||| || ||| || | ||| Sbjct 23876 AGATCGGCGACAAGTTCGCCTCACGTCACGGAC-AGAAGGGTACTATCGGTATCACCTAC 23818 Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693 |||| |||||||||||||||||| || ||| | || ||| | ||||||||||| Sbjct 23817 CGCCAGGAGGACATGCCGTTCACGGCGGAGGGCATCACGCCCGACATCATCATCAACCCG 23758 Query 33694 CATGCGTTCCCCTCGCGCATGAC 33716 || || | ||||| || ||||| Sbjct 23757 CACGCCATTCCCTCCCGTATGAC 23735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356226084695593