Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1277 109 5e-19 seq561 95.1 1e-14 seq1532 84.2 2e-11 >seq1277 Length=70460 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| |||||||| || |||||||| || || || || || || |||||||| Sbjct 15592 GTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCTCGAGCTG 15651 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || ||||| |||||| ||| ||||| ||||| || ||||| || ||||| ||| || Sbjct 15652 CTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTT 15711 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | || |||| | ||| ||||| | ||| | ||||||||||| Sbjct 15712 CGCCTTCACGTTGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGT 15771 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 |||||| || ||||| || |||||| Sbjct 15772 CAACGTCTTCACGAAGATCTGCATA 15796 >seq561 Length=237278 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || ||| || |||| || || ||||| Sbjct 98110 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTG 98169 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || ||||| |||| ||||| ||||| || || || ||||| || ||||| ||| || Sbjct 98170 CTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 98229 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||||| | ||| ||||||| ||| | ||||||||||| Sbjct 98230 CGCCTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 98289 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 ||| || || || || || |||||| Sbjct 98290 CAAGGTCTTGACAAAGATCTGCATA 98314 >seq1532 Length=168184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/171 (73%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 ||||||||||| || | ||| || ||||||||||||| ||||| ||| | || || | Sbjct 155664 GGCATGAACGCCACGCTCATGCGCCAGTACATCGAGTTCGTTGCTGACCGTCTACTGGTT 155723 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATG-CGCGTAACCCCTTTTCG--TTTATGAACAAC 53010 |||||| ||| | ||| || | | || ||||| ||||| || ||| ||| Sbjct 155724 GCGCTCGGCGGAGAGAAGTTCTACAACGTCACG-AACCC--TTTCGACTTCATGGACATG 155780 Query 53011 ATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 || |||||| |||||||||| ||||| ||||||| || ||| ||| ||| Sbjct 155781 ATCTCGCTCCAGGGCAAAACGAACTTCTTCGAGAAGCGCGTGTCCGACTAC 155831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496053266415200