Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1532 208 1e-48 >seq1532 Length=168184 Score = 208 bits (230), Expect = 1e-48 Identities = 397/574 (69%), Gaps = 12/574 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| | || || || || || ||||||||||| ||| | | || Sbjct 153581 ATATGGCAGATGTACAAGACCGCCCAAGCGTCGTTCTGGACGGTCGAGGAGATTAACCTC 153522 Query 125079 TCCAAGGACCTGTACGATTGG-GAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 || | || || || ||| | ||| | | || ||| |||||| | || || || Sbjct 153521 TCATACGATCTCATGGACTGGAGCGACAAGCTGAACGATAAC-GAGCGACACTTCATCTC 153463 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 || | | |||||||| |||| || || || || |||||||| ||||| || || | Sbjct 153462 CTACGTGCTCGCCTTCTTCGCCGCTTCAGACGGCATAGTCAACGAGAATCTCGTCGAG-C 153404 Query 125197 GATTCTCTCAAGAGTTGACCATTCCA--GAGGTGTCGTGCTTTTACGGATTCCAAATCAT 125254 | ||||| | ||| || || || |||| ||||| ||||| ||||||||||| Sbjct 153403 GGTTCTCCAACGAGGTG--CAGGCCGCGGAGGCCCGCTGCTTCTACGGCTTCCAAATCAT 153346 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| || ||||| ||||| || | ||||| || || |||| ||||| ||||| || Sbjct 153345 GATGGAAAACGTACACTCCGAGACATACTCGCTCCTCATCGACACCTACATCCGCGACCC 153286 Query 125315 -GCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 ||| | | | | | | |||| |||| |||||||| | |||| || || ||| Sbjct 153285 CGCA--GAACGCGCCTACCTCTTCGACGCGATCGACACCATTCCGTGCATCAAGAAGAAG 153228 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 || | |||| | | || ||||||| ||||| || | |||||| | || || Sbjct 153227 GCAGACTGGGCGTTGCGCTGGATCGCAGACGAGCGCTCCGTCTTCGCCGAGCGGCTCGTC 153168 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || ||||||||||| |||||||||||||| || || || || |||||||| |||||| Sbjct 153167 GCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTC 153108 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||||||||||||||||| || ||||| | |||||| | || || |||||| Sbjct 153107 AAGAAGCGCGGACTCATGCCGGGCTTGACGTTCTCGAACGAGCTCATCAGCCGCGACGAG 153048 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTTTC 125586 ||| | ||| |||||||| ||| || |||| Sbjct 153047 GGCATGCACACCGACTTTGCGTGTCTCCTATTTC 153014 Score = 205 bits (226), Expect = 1e-47 Identities = 387/561 (69%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| | |||||||| |||||| |||| ||||||||||| | || ||| | ||||| Sbjct 154938 ATTTGGCAGATGTACAAGAAGGCTGAGGCGTCCTTTTGGACCGCGGAGGAGATGGATCTC 154997 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||| ||| | | ||| | || | ||||| | || | ||| Sbjct 154998 TCCAAGGACATGCACGACTGGAACAACCGTCTCACCAATGACGAGCGCCACTTCGTCTCG 155057 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| || | || ||||| |||| ||| || || ||||||||||| ||||| || || || Sbjct 155058 CACGTTCTCGCGTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAATCTCGTCGA-GCG 155116 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 ||||| | ||| | ||| | | |||| ||| ||||| || || ||||| ||||| Sbjct 155117 GTTCTCCAACGAG--GTCCAAGCTGCTGAGG-CTCGCTGCTTCTATGGCTTCCAGATCAT 155173 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | ||||| || | ||||| || || |||| ||||| || || Sbjct 155174 GATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACACCTACATCAAGGACCC 155233 Query 125315 ---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 | | || ||| | || || | || ||||| || | || | || || || Sbjct 155234 CCAGGAGCGCGAACGC---CTGTTCGATGCTATCGATACCATTCCTTGCATCAAGAAGAA 155290 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| | |||| | || |||||| ||| | ||||| ||| | | || | || | Sbjct 155291 GGCCGACTGGGCCCTGCGCTGGATCTCCGACAAGGAGTCTGCGTTCTCTGAGCGTCTCAT 155350 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || |||||||| || |||||||||||||| || || ||| || ||||||| ||||| Sbjct 155351 TGCCTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCT 155410 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 ||||||||| || | ||||| || || || | |||||| | || ||||| ||||| Sbjct 155411 CAAGAAGCGTGGCTTGATGCCTGGGCTCACCTTCTCCAACGAGCTGATCTCTCGCGACGA 155470 Query 125552 GGGCCTACACTGTGACTTTGC 125572 ||| | ||| ||||| || Sbjct 155471 AGGCATGCACACGGACTTCGC 155491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741043165331560