Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq590 93.3 3e-14 >seq590 Length=36723 Score = 93.3 bits (102), Expect = 3e-14 Identities = 201/297 (68%), Gaps = 3/297 (1%) Strand=Plus/Plus Query 25305 GGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 25364 || || |||||||||||||||| | ||| ||||| | ||||| || | || || Sbjct 25004 GGGTGGGGGTCGTAACCCTCCACGATGAAGTCCTCGCTCCGGAAGTCATCGATGCCCTTG 25063 Query 25365 ACCCT-CCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTT 25423 || | | | || | ||| |||| || || || ||||| | ||||||||| || || Sbjct 25064 ACTTTGCGCGCCCAT-CGCAGCTTGGGGAATGGCCTTGGCTCGCGCTCGAGCTGCGTTTT 25122 Query 25424 CAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCC 25483 |||| || ||||| || |||||||||| |||||||| || | || | ||| Sbjct 25123 GAGCGCGTCGACGTGGTCGCGGTAGACGTGCGCGTCTCCGAGCTGGATGATCAGCTCGTG 25182 Query 25484 CGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTT 25543 ||| | |||| |||| || | ||||| ||||||||| |||| || ||||| Sbjct 25183 CGGGACGGTATCGGTGACGTGCGCGACCATGTGCGTGAGGAGGGCGTAGGACGCAATGTT 25242 Query 25544 AAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 25600 ||||| | |||| ||||| || | | || | |||||| | | || ||||||| Sbjct 25243 GAAGGGGATTCCGAGCCCCAGGT-CGGCGGAGCGCTGGTACATCAAGCAGGAGAGCT 25298 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 25735 TGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTGTACTCTGCTCC 25793 || ||||| || || ||| | |||| ||| || || | || |||| ||| || || Sbjct 25516 TGGAGCTGGTCAACGCCCTTGCCCGTGTATTCCGCGTCGCA-GTCCTCATACGAGGCGCC 25574 Query 25794 GAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAA 25853 || | || ||||||||| ||||| || || || ||||| || | || ||| | | Sbjct 25575 AAAGTGCCGCCACTGGAAGCCGTAGACGGGCCCGAGGTCGCCCGCGCGCCGGTGGCCCAG 25634 Query 25854 GCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTC 25913 ||| | ||| || | || || |||| || || ||||||||||||| | ||||| | Sbjct 25635 GCCGCGCTTCTCGAGGAACTCCTTGGAGCCGTTACCGTCCCAGATCTTGATGCCCTTGGC 25694 Query 25914 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 25962 |||||||| |||||| ||| | ||| |||||||| || | |||| Sbjct 25695 GGAGAGCTGCGTGGAGTCGGTGCAGCCTTGAACGAACCAGAGTAACTCC 25743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340130424265863