Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1277 96.9 3e-15 seq561 87.8 2e-12 >seq1277 Length=70460 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/207 (72%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCCTCCAGCT 48581 ||||| || |||||| ||||||||||| || | ||| ||| || | ||||| |||| Sbjct 15593 TGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGACAA-CGTCCTGC-CATCCTCGAGCT 15650 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || | || ||||||||||| || ||| | | ||||||||| || | Sbjct 15651 GCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCT 15710 Query 48642 TCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACC 48699 || ||| | | | || |||||||||| |||||| ||||| || ||||| || || Sbjct 15711 TCGCCTTCACGTTGTCG--ATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCC 15768 Query 48700 GGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || |||||||| Sbjct 15769 GGTCAACGTCTTCACGAAGATCTGCAT 15795 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| || ||||||||||| | || | || || ||||||||| ||| Sbjct 15313 TGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGACAGAGTG-CGTCCGTCCTCCAACTG 15371 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || || |||||||| || || | || |||||||| || || Sbjct 15372 CTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTT 15431 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 | ||||| | | || || || |||| |||||| ||||| || ||||| || || Sbjct 15432 CGCCTTGACGTTGTCG--ATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTCTTCCCC 15489 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || || || |||||||| Sbjct 15490 GTCAACGTCTTGACGAAGATCTGCAT 15515 >seq561 Length=237278 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | | | || || ||||||| |||||||| || || Sbjct 97841 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGC-CGTCCTCGAGCTGCTTGCCCGCGA 97899 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 | || | |||||||||||| || | || ||||||||| ||| ||| ||||| | Sbjct 97900 AGATCAGGCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACGT 97959 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || ||||| |||| ||||| ||||| || || || ||||| || || || || Sbjct 97960 TGTCG--ATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTACCCGTCAGGGTCTT 98017 Query 48712 CACAAAAATCTGCAT 48726 || || |||||||| Sbjct 98018 GACGAAGATCTGCAT 98032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421242313047731