Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq539 86.0 3e-12 seq1096 84.2 1e-11 seq423 84.2 1e-11 seq1415 82.4 4e-11 seq278 82.4 4e-11 seq259 82.4 4e-11 >seq539 Length=35607 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||| | | |||||||||| ||||||| ||||||||||||| ||||||| |||| Sbjct 18561 ATTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCA 18620 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||| | |||| Sbjct 18621 ACTGAGCTAGTCGGCC 18636 Score = 84.2 bits (92), Expect = 1e-11 Identities = 75/93 (81%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 11441 AATAAAAAATC--AAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || |||||| | |||| ||||| | | |||||||||| ||||||| ||||||||| Sbjct 12312 AACAAAAAAACGAAAATAATGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTA 12253 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||| ||||||||||||| | |||| Sbjct 12252 GCACCACGCTCTAACCAACTGAGCTAGTCGGCC 12220 >seq1096 Length=75590 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 29925 TTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 29866 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| | |||| Sbjct 29865 CTGAGCTAGTCGGCC 29851 >seq423 Length=125448 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| | | |||||||||| ||||||| ||||||||||||| ||||||| || Sbjct 55883 AAACTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAAC 55824 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||| | |||| Sbjct 55823 CAACTGAGCTAGTCGGCC 55806 Score = 82.4 bits (90), Expect = 4e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 49994 TTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 50053 Query 11515 CTGAGCTAATGGGCCGT 11531 |||||||| |||||| Sbjct 50054 CTGAGCTAGCCGGCCGT 50070 >seq1415 Length=55545 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 34763 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 34822 Query 11528 CC 11529 || Sbjct 34823 CC 34824 >seq278 Length=123182 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 40808 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 40749 Query 11528 CC 11529 || Sbjct 40748 CC 40747 >seq259 Length=85770 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 54863 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 54922 Query 11528 CC 11529 || Sbjct 54923 CC 54924 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261485683434556