Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1277 93.3 4e-14 seq561 89.7 5e-13 >seq1277 Length=70460 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | ||| ||||| || |||| ||||||| ||| Sbjct 15312 GTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCCAACTG 15371 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || ||| | ||||| || | ||||| ||||| |||||||| || ||||| | || || Sbjct 15372 CTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTT 15431 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||||||| | ||| ||||| | ||||| || | || ||||| || || || Sbjct 15432 CGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTCTTCCCCGT 15491 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 | || || || ||||||||||| Sbjct 15492 CAACGTCTTGACGAAGATCTGCAT 15515 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94800 CCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 ||| ||| | || || ||||| || | ||| || ||| | ||| | ||||||| Sbjct 15080 CCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCA 15139 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 ||| || || ||||||| | | ||||| || ||||| || || || || || | || Sbjct 15140 ACTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAA 15199 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || ||||| ||| | ||| ||||| | | || || || | |||||| || || | Sbjct 15200 TCTTCGCCTTCACGTTGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCC 15259 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || || || ||||||||||||| Sbjct 15260 CGGTGAGCGTCTTGACGAAGATCTGCATGC 15289 >seq561 Length=237278 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 94798 CACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCT 94856 ||||||| || | || || ||||| || | ||| || ||| || ||| ||||| Sbjct 98103 CACCAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCT 98162 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| ||||| | ||||| | | ||||| || || ||||| || || ||||| | Sbjct 98163 CAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCT 98222 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || |||||||| | ||| ||||| | ||||| |||| |||||||| | Sbjct 98223 GGATCTTCGCCTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCT 98282 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || | || || |||||||||||||| Sbjct 98283 TGCCGGTCAAGGTCTTGACAAAGATCTGCAT 98313 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | |||||||| ||||| ||||| || ||| Sbjct 97878 TCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGATCCGGAGGGATACCCTCCTTG 97937 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||||||| | ||| ||||| | ||||| || | ||||| Sbjct 97938 TCCTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATC 97997 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || || ||||||||||| Sbjct 97998 GTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 98032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448281500099160