Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq614 96.9 5e-16 seq1362 93.3 7e-15 >seq614 Length=367072 Score = 96.9 bits (106), Expect = 5e-16 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||| ||||| || || |||||||| ||||||||| |||| || | |||| || Sbjct 65442 GCTATCCGCCGTCTCGCCCGCCGTGGTGGTGTCAAGCGTATCTCCGGTCTCATCTACGAG 65383 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGA-TGCTTTCCACTA 16605 |||| ||| | |||| | |||||||||||| ||| ||| || | ||| | | || | || Sbjct 65382 GAGACTCGCGGTGTTCTCAAGATCTTCCTCGAGAACGTCATTCGTGACTCCGTTACT-TA 65324 Query 16606 TACCGAGCACGCTAA 16620 ||||||||||| || Sbjct 65323 CACCGAGCACGCCAA 65309 >seq1362 Length=38621 Score = 93.3 bits (102), Expect = 7e-15 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || || |||||||| |||||||||||||| ||||||||| |||| Sbjct 24164 AGGTATCACTAAGCCCGCCATTCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTC 24105 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | |||| || |||| |||| ||| | || ||||| ||| ||| ||| Sbjct 24104 GGGCCTCATCTACGAGGAGACCCGTGGTGTCCTCAAAATCTTTCTCGAGAACGT 24051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073617334583