Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq573 145 5e-30 seq639 104 2e-17 seq1492 93.3 3e-14 >seq573 Length=79915 Score = 145 bits (160), Expect = 5e-30 Identities = 221/312 (71%), Gaps = 7/312 (2%) Strand=Plus/Plus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 |||| ||||||| ||||| |||||||| || |||||||| |||||| | || || | Sbjct 30628 CCAAAATCGAGGGCAAGGGTAACGGTATCAAGACCGTCATCCCGAACATGTCCGACGTGG 30687 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 | || ||| | ||||| |||| |||||||| || | ||||| ||||| ||||||| Sbjct 30688 CCCGCGCCCTCAGCCGCCCGCCCACGTACCCGACCAAGTTCTTCGGTTGCGAGCTTGGCG 30747 Query 6352 CTCAGACGCAGTTT--GATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTC 6409 | ||||| |||| || | || ||||| |||| |||||| ||||| | || || | Sbjct 30748 CACAGAC--AGTTCTCGACGAGAAGAACGACCGCTACATCGTCAACGGCGCTCACGACGC 30805 Query 6410 TGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATG 6469 ||||||||| | || | || |||||||| || ||||| |||||||| || || Sbjct 30806 TGCCAAGCTCCGCGAGCTGCTCGACGGCTTCATCGAAAAGTTCGTGCTGTGCAAGGCGTG 30865 Query 6470 CGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTG 6529 | | ||||||||||| || | || | |||||||| || |||| | | ||| Sbjct 30866 CAAGAACCCGGAGACGGACTTGATCAT---CACCAAGAGCGACGACATCATCCGCGACTG 30922 Query 6530 CAAAGCGTGCGG 6541 ||| || ||||| Sbjct 30923 CAAGGCTTGCGG 30934 >seq639 Length=11368 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 9632 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 9691 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 9692 GCCAATATTTAGCTTTA 9708 >seq1492 Length=16596 Score = 93.3 bits (102), Expect = 3e-14 Identities = 62/69 (90%), Gaps = 5/69 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 11508 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 11449 Query 25957 TAATCCTTT 25965 |||||| || Sbjct 11448 TAATCCATT 11440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940133765461