Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq561 114 1e-20 seq1277 109 5e-19 >seq561 Length=237278 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || || |||| ||||| || || | || Sbjct 98313 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCC 98254 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| ||||| || || || Sbjct 98253 GACACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 98194 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| |||||| | ||||| |||||| Sbjct 98193 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCTTGTCCGACTACAAC 98134 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 98133 ATCCAGAAGGAGTCGACC 98116 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| ||| |||| || || || || | || Sbjct 98032 ATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACGATCACCCTCGAGGTCGAGTCGTCC 97973 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| |||||||||||||| || || ||||| Sbjct 97972 GACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCGGATCAG 97913 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| |||||| | || || |||||| Sbjct 97912 CAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAAC 97853 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 97852 ATCCAGAAGGAGTCGACC 97835 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| || || || || || | Sbjct 97804 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATCACGCTGGAGGTTGAGTCCTCG 97745 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || ||||||||||| || || ||||| || Sbjct 97744 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAG 97685 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||||| ||||| |||||| |||| || |||||| Sbjct 97684 CAGCGCCTGATCTTCGCCGGCAAGCAGTTGGAGGACGGCCGCACGCTCTCGGACTACAAC 97625 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 97624 ATCCAGAAGGA 97614 >seq1277 Length=70460 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| || || || || | | Sbjct 16023 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCGTCG 15964 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || ||||||||||| || || || ||||| Sbjct 15963 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 15904 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || |||||||| ||| | |||||| |||||| |||| || |||||| Sbjct 15903 CAACGTCTCATCTTCGCCGGCAAGCAGCTTGAGGATGGGCGCACCCTCTCGGACTACAAC 15844 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 15843 ATCCAGAAGGAGTCCACC 15826 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || | || || || || || | || Sbjct 15515 ATGCAGATCTTCGTCAAGACGTTGACGGGGAAGACCATTACCCTCGAGGTCGAGTCTTCC 15456 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || |||||||||||||||||||| || || || Sbjct 15455 GACACGATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 15396 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||||| ||||| ||||| | || ||||||||| Sbjct 15395 CAGCGCTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGACGCACTCTGTCGGATTACAAC 15336 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 15335 ATCCAGAAGGAGTCCAC 15319 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || | || || || || || | || Sbjct 15795 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCTTCC 15736 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || || || ||||||||||| || || ||||| || Sbjct 15735 GATACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 15676 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || ||||| ||| | |||||| | | || | || || |||||| Sbjct 15675 CAGCGTTTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACGTTGTCGGACTACAAC 15616 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 15615 ATTCAGAAGGAGTCTACC 15598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419719145182015