Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1136 123 5e-23 seq1328 120 6e-22 seq1532 89.7 1e-12 >seq1136 Length=88086 Score = 123 bits (136), Expect = 5e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || |||||||||||||||||||| || ||| ||||||| || || | || || || Sbjct 21543 TCTATCTGGTGGTTGGAAGATGAAGCTCGCACTCGCTCGCGCGATGCTCTTCCGGGCTGA 21484 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 | |||| || || || ||||| || |||||| ||||| | |||||| || ||||| | Sbjct 21483 TATCCTCCTCCTCGACGAGCCTACGAACCACTTGGACGTCGTCAACGTGGCGTGGCTCGA 21424 Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883 | |||||| ||||| || | | | || |||| ||||| |||||||||||||| Sbjct 21423 GAGCTACCTCACCAGCCTCACCACCTGCACGTCGATCATCGTCTCGCACGACTCTGGCTT 21364 Query 279884 CCT 279886 ||| Sbjct 21363 CCT 21361 Score = 96.9 bits (106), Expect = 7e-15 Identities = 137/189 (72%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 280172 TGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGAC 280231 |||| |||| ||||| ||| | || ||||| || || |||| |||||| || || Sbjct 21072 TGTCCTTGGTCCCAACGGTTCCGGCAAGTCGACTCTCGTCAAGCTCCTGATCGGTGATCT 21013 Query 280232 CCAGGCCA-CTGAGG-GGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 | || ||| | | || ||| | |||||||| |||||| || || | ||||||||| Sbjct 21012 CGAGCCCAACCGTGGCGGTGAGACCTGGAAGCACCCCAACTTGGTCATCGGTTACGTCGC 20953 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 |||||||| |||||||||||||| ||||||| |||| ||| || | | ||||| Sbjct 20952 GCAGCACGCGTTCCACCACATCGACCACCACCTCGACAAGACCCCGCTCGAGTACATGTT 20893 Query 280349 GTGGCGCTA 280357 |||||| || Sbjct 20892 GTGGCGTTA 20884 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| ||||| |||| | ||||||||||| || |||| ||||| ||||| ||| Sbjct 21950 GGTGAGGACCTGTGCAACTGCCAGTTCTCGCTCGCCTACGGTGCCAAGATCCTGCTGAAC 21891 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | | |||| | ||||||||||| |||| || ||||| ||||| ||| || | Sbjct 21890 ACCGCTTCCCTCCGCCTCAAGCGTGGCCACCGCTACGGTCTTTGCGGTCGCAACGGTACC 21831 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGG 279499 || ||| || || |||||||| || | ||||| Sbjct 21830 GGCAAGTCGACGCTCATGCGCGCGATCACTAACGG 21796 >seq1328 Length=41146 Score = 120 bits (132), Expect = 6e-22 Identities = 238/350 (68%), Gaps = 2/350 (1%) Strand=Plus/Minus Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGA-GCAG 218715 |||||||||| | ||||| || ||||| | ||| | |||||||||||| || ||| Sbjct 27679 AGGTCGCTCAACTCGTCGGTTACGTTTCCGAGACTTCCGCCTACCATCACGGCGAAGCA- 27621 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||| || || |||| | | |||| |||||||| || ||||| |||||||||||| Sbjct 27620 AGTTTGATGGCCACCATCATCAACCTGGCGCAGGACTACGTCGGCAGCAACAACATGAAC 27561 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCT 218835 || || | || |||||||| || ||| | ||| ||| || ||||| || | Sbjct 27560 TTACTTTTGCCAAACGGTCAATTCGGTACGCGTGATCAGGGCGGTAAGGACCACGCCGCG 27501 Query 218836 GCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGAT 218895 || | || |||| || || || |||| || | ||| | ||| | ||| || || Sbjct 27500 GCTCGTTACATCTACACCGAGCTGGCGCCGGTCATCCGCAATGTGATGCATCCCGCAGAC 27441 Query 218896 GATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTG 218955 |||| | |||| ||||| |||| || ||| ||| | |||||||||||||| || Sbjct 27440 GATGCGGTCCTGTCGTATCAGCAGGATGACGGTAGGTCGGTAGAGCCCGAGTGGTACATG 27381 Query 218956 CCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 || | || ||| | | | || || || || | |||||||| || || Sbjct 27380 CCCGTCATCCCGCTGGTCTTGGTCAACGGCGCTGAGGGTATCGGTACTGG 27331 >seq1532 Length=168184 Score = 89.7 bits (98), Expect = 1e-12 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| || ||||| | |||||||||||||| ||||| || Sbjct 152705 TCGAAGAAGTTCGTCTTGCCGGTGAGCGAGATCATGTCCATGAAGTCGAACGGGTTCGTC 152764 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||| ||||| ||| || || |||| | |||||||| || ||||| | Sbjct 152765 GCGCGGTAGTGCTTCTCGCTGCCGAGCGCGACGAGCAGCCGGTCTGCGACGAACTCGATG 152824 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716 ||||| | |||||| || | ||||||||| |||| Sbjct 152825 TACTGGCACATCAGCTCGGCGTTCATGCCGATCA 152858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027814004185771