Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq561 122 7e-23 seq1277 84.2 2e-11 >seq561 Length=237278 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || ||| ||| ||||| || || ||| Sbjct 98117 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTTCCA 98176 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| |||||||| || ||||| ||||| || Sbjct 98177 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTG 98236 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| || ||||| || | ||| | || |||||||||| || Sbjct 98237 ACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTC 98296 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 98297 TTGACAAAGATCTGCAT 98313 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || ||| || |||||| || || || ||| Sbjct 92843 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTTCGGCCATCTTCGAGCTGCTTGCCA 92902 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| || || | | |||| || ||||| ||||||| || Sbjct 92903 GCGAAGATGAGACGCTGGGTGTTTGGCGCAGTGCCCTCCTTGTCATGAATCTTTGCCTTC 92962 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||||||| || | | |||| ||| | || |||||||||| || Sbjct 92963 ACGTTTTCGATAGTGTCGGACGACAGGGCCTCCAGGGTGATGGTCTTGCCGGTCACGGTC 93022 Query 114366 TTTACAAAAATCTG 114379 || || || ||||| Sbjct 93023 TTGACGAAGATCTG 93036 >seq1277 Length=70460 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || |||||||| ||| | || || || || | || || || Sbjct 15090 CGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCC 15149 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||||||||| ||||| ||||| ||||| || || || |||||| || Sbjct 15150 AGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTCGCCTT 15209 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||||||| ||| || || |||| || | ||| || ||||| || || Sbjct 15210 CACGTTGTCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCGGTGAGCGT 15269 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 15270 CTTGACGAAGATCTGCATG 15288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | || || | || | || || || || || |||||||| || Sbjct 15794 ATACCGCCACGAAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 15853 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| ||||| || || || ||| |||||||||| || || || || Sbjct 15854 GAGAGGGTGCGCCCATCCTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGG 15913 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | || | |||||| | || || Sbjct 15914 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGACGACTCA 15973 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | ||| | ||| ||||| || || || || || || ||||||||| || Sbjct 15974 ACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGCCT 16027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420125536608372