Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1532 306 7e-78 seq865 154 3e-32 >seq1532 Length=168184 Score = 306 bits (338), Expect = 7e-78 Identities = 394/536 (74%), Gaps = 21/536 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||||||||| || |||||||||||||| ||||| || | | ||||| Sbjct 153455 CTCGCCTTCTTCGCCGCTTCAGACGGCATAGTCAACGAGAATCTCGTCGAGCGGTTCTCC 153396 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||||||| | ||||| |||||||||||||||||||| || || || ||| Sbjct 153395 AACGAGGTGCAGGCCGCGGAGGCCCGCTGCTTCTACGGCTTCCAAATCATGATGGAAAAC 153336 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 || ||||| ||| ||| | || || |||| ||||||| || |||| || || Sbjct 153335 GTACACTCCGAGACATACTCGCTCCTCATCGACACCTACATCCGCGACCCCGCAGAACGC 153276 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | || ||| | || || || || || || ||||||||||||||||| ||||||||| Sbjct 153275 GCCTACCTCTTCGACGCGATCGACACCATTCCGTGCATCAAGAAGAAGGCAGACTGGGCG 153216 Query 42663 CTCAACTGGATCG-AGAGTCCCGA-CGCAACG--TTCGGCGAGAGGCTGGTAGCCTTTAC 42718 | |||||||| ||| ||| ||| || |||| |||| |||| || || || | Sbjct 153215 TTGCGCTGGATCGCAGA----CGAGCGCTCCGTCTTCGCCGAGCGGCTCGTCGCGTTCGC 153160 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-A 42777 |||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| || Sbjct 153159 CGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCGCCGCCATCTTCTGGCTCAAGAAGCG 153100 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 || || ||||| || | || ||||||||||| ||||||||| | |||||||| ||| Sbjct 153099 CGGACTC-ATGCCGGGCTTGACGTTCTCGAACGAGCTCATCAGCCGCGACGAGGGCATGC 153041 Query 42838 ATAGGGACTTTGCCTGCCTCCT-GTTCTCGA---GCCACCTCAGGCACAAGCCCTCGAAG 42893 | | |||||||| || ||||| ||| | | || || | |||||| || Sbjct 153040 ACACCGACTTTGCGTGTCTCCTATTTCACCATTTGCGACGCCGGGCACATCCC------- 152988 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 ||||||| | || ||| |||||||| ||||||||||||||||||||||| Sbjct 152987 AAGCGGGTACTACAAATTATCGTCGAGGCCGTCGAGATCGAGAAGGAGTTCCTCAC 152932 Score = 280 bits (310), Expect = 3e-70 Identities = 458/652 (70%), Gaps = 22/652 (3%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||||| |||||||| || || |||||||| Sbjct 154947 ATGTACAAGAAGGCTGAGGCGTCCTTTTGGACCGCGGAGGAGATGGATCTCTCCAAGGAC 155006 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAG-AACGAAAAGTTT---TTCCTCAAAAACATACT 42424 | | || |||| | || |||| | || || || ||| || || | || Sbjct 155007 ATGCACGACTGGAACA-ACCGTCTCACCAATGACGAGCGCCACTTCGTCTCGCACGTTCT 155065 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 || |||||||||||||| |||||||| ||||| ||||| || | | ||||| || Sbjct 155066 CGCGTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAATCTCGTCGAGCGGTTCTCCAA 155125 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||| || |||||| ||||||||||| ||||||||||| || |||||| | Sbjct 155126 CGAGGTCCAAGCTGCTGAGGCTCGCTGCTTCTATGGCTTCCAGATCATGATGGAGAACAT 155185 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||||| ||| ||| | || || |||| |||||| ||| ||| ||||| | Sbjct 155186 CCACTCCGAGACCTACTCGCTCCTCATCGACACCTACATCAAGGACCCCCAGGAGCGCGA 155245 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | |||||| | || || || || || || ||||||||||||||||| |||||||| || Sbjct 155246 ACGCCTGTTCGATGCTATCGATACCATTCCTTGCATCAAGAAGAAGGCCGACTGGGCCCT 155305 Query 42665 CAACTGGAT---CGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 |||||| ||| | || | ||||| ||| | || | ||||| |||| Sbjct 155306 GCGCTGGATCTCCGACA---AGGAGTCTGCGTTCTCTGAGCGTCTCATTGCCTTCGCCGC 155362 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 |||||||||||||||||||| ||| | |||||||||||||||||||||||| || | Sbjct 155363 TGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGG 155422 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 | |||||| || ||||||||||| ||||| || ||| | ||||| || |||| | Sbjct 155423 CTTGATGCCTGGGCTCACCTTCTCCAACGAGCTGATCTCTCGCGACGAAGGCATGCACAC 155482 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT---CAGGC-ACAAGCCCTCGAAGGAGC 42897 |||||| || ||| | || ||| |||||||| |||| | || ||| | Sbjct 155483 GGACTTCGCGTGCTTGCTCTTC---AGCCACCTGAAGAGGCGTCCCCACCCCGATG---- 155535 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 |||| | ||||||| ||||||||| ||||| ||| |||||||||| || Sbjct 155536 TTGTCCTCACGATCATCAAGGAGGCCGTCGAGATTGAGCAGGAGTTCCTGAC 155587 >seq865 Length=134895 Score = 154 bits (170), Expect = 3e-32 Identities = 346/519 (67%), Gaps = 22/519 (4%) Strand=Plus/Plus Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGG 244334 || |||||||| | ||| |||||| | ||| |||| ||| |||| | | ||| Sbjct 113429 CCCAGAGGTCCGTAGGAGTGATGCCCCAGAGGTCGTACTGGAGCTTGCCCTCGGAGGCGG 113488 Query 244335 GGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGA 244394 ||||||||| ||| ||| ||||| ||| |||| |||| || |||||| | |||| Sbjct 113489 GGCTGCCCTGGTACGTCTCGTAGGTCCCGAACTGCTGTGCCATCTCGCAGCTCGCCTCGA 113548 Query 244395 GGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGG 244454 || || | ||||||||||||||||||| || ||| | | ||| |||| ||| Sbjct 113549 CCGCCGCATGGTAGATGGTCTCGAAGATCTGCTGGTTGAGCTTGCGCGCCTCAACGCCAT 113608 Query 244455 TGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGG 244514 |||||| || | | | |||||| | || |||| || |||||||| | ||||||| Sbjct 113609 CGAAGGGCATCCGAAGCGCCATGAACGCATCCGCCAAGCCTTGCACGCCCACACCGATGG 113668 Query 244515 GTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCA 244574 | | ||| ||| |||| || || ||| ||||| | |||||| |||| ||||||| | Sbjct 113669 GACGGTGGCGCATGTTTGAACGTTGGGCCTCGGGAATGGGGTAGTGGTTGACGTCGATGA 113728 Query 244575 CCTTGTTGAGGTTG--CGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA 244632 |||||||||| | | | | | || |||||| || | ||| |||| ||| Sbjct 113729 TGCGGTTGAGGTTGAAAGCGACAACCTTCG--TCACGTCGTGCAACCTCTGGAAGTTGTA 113786 Query 244633 CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAG 244692 | | | || || ||||| ||| ||| |||| ||| || Sbjct 113787 C---TTGCCATTCT---CGATG------------AACGAAGGGAGAGCGATAGAGGCTAG 113828 Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 |||||| ||||| ||| || | | ||||| || ||||| ||||| |||||| Sbjct 113829 GTTGCAAACGGCAGTCTCGTCGGGAGAAGAGTACTCCACGATCTCCGTGCAAAGGTTAGA 113888 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGC 244791 ||||||||||||| |||| ||| || || |||||||| Sbjct 113889 CGACTTGATGGTGCCGAGGTTCTGCTGGTTCGACTTGGC 113927 Score = 102 bits (112), Expect = 2e-16 Identities = 248/369 (67%), Gaps = 20/369 (5%) Strand=Plus/Plus Query 243776 AGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGC 243835 ||||||||||||||||||||||| || | |||| | | || ||||||| ||||||| Sbjct 112900 AGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCAGCCATAGAAGTGCATGCTCGTCAGC 112959 Query 243836 TTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGG 243895 | | | || | | || ||| || ||||| ||||| |||| Sbjct 112960 TGGCCCGTGGTGGG---------GGACTG---CAGGTGGACATTGAGCGACTGCGACTGG 113007 Query 243896 TCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATAC 243955 || ||| | | || || ||||| | | || | | |||||| || ||||| | Sbjct 113008 CAGATGAATGCTCCACGATCCGCGGCGAGGTCGAGAACCTTCTTCTGCGAGATCTCCCAG 113067 Query 243956 GCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCC 244015 | ||||||||||||| ||||| | ||||||| || |||||| |||| | ||||| Sbjct 113068 ACGGTCTTGTAGATGGCCTTGACATCGTCGGGGATGCCATCGATGCTCTGGATAGAGCCG 113127 Query 244016 TTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGC-TCCAGCGC 244074 |||| |||||| | | | ||||| ||||||||| ||| |||||| | ||||| Sbjct 113128 TTGTTCGCGATGATCATGTTCTTCATGTCATCGTTCCAGAGG-CCAAGCTCGACCAGC-T 113185 Query 244075 CTCGACCAGGTGCC-TGTTC--ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTA 244131 | ||| || ||| || | || ||||| |||||||||| || || || ||| ||| Sbjct 113186 CACGA--AGCAGCCATGGGCATACAACCTGGAACTCTCCCGCAAGGACACGACGCGTGTA 113243 Query 244132 GAGGTTGCT 244140 || |||||| Sbjct 113244 GATGTTGCT 113252 Score = 91.5 bits (100), Expect = 3e-13 Identities = 164/239 (69%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074 || || ||||| |||||||| || | ||| || || | || | || || ||| Sbjct 114253 AAAAGATCGGGTATCCAGAGCGCGTAGAACAGATCGCGGGCACGGACTTCCTCTTTGCCG 114312 Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134 |||||| | ||| || | || || ||||||||| ||||||||||||| | ||||| Sbjct 114313 TGGTTCTTGCGCAGATCAATGAACTCGAAGACGTCGGCGTGCCAGGGCTCAAGGTAGATG 114372 Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAG----CGCGTT 245190 |||| || ||||| |||||||| || ||||| || | | | |||| ||| | Sbjct 114373 GCGAATGCTCCGGGGCGCTTGTTACCCCCCTGATCGA----CGTAACGAGCCGTCGCATC 114428 Query 245191 GAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGG 245249 | | | ||| || |||| || || ||||| |||| |||||| || || ||||||| Sbjct 114429 GTATACGCGAAGCATAGGGACGATCCCGTTCGAGTAGCCGTTCGTCCCGGCAATGTAGG 114487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944318766860560