Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq561 93.3 3e-14 seq1277 86.0 5e-12 >seq561 Length=237278 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||| || || || ||||||||||||||||| |||||||| || | | || Sbjct 97587 AGACGCAGGACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 97646 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||| ||||||||||| || |||||||||||||| || ||| | | ||| Sbjct 97647 CCGTCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCC 97706 Query 34030 TTGTCC 34035 |||||| Sbjct 97707 TTGTCC 97712 >seq1277 Length=70460 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || ||||| ||| ||||||||| ||||||||||| | | Sbjct 15289 CCGCCGCGCAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAC 15348 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || |||| ||||| ||||||||||| || |||| ||||||||| || Sbjct 15349 AGAGTG-CGTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTC 15401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397054023348262