Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq561 167 6e-36 seq1277 150 4e-31 seq1532 84.2 5e-11 >seq561 Length=237278 Score = 167 bits (184), Expect = 6e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || || || | |||||| || || ||||| || ||||| | | Sbjct 97578 CCACCGCGGAGACGCAGGACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 97637 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || || || || || ||||||||||| ||||| || ||| Sbjct 97638 AGCGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 97697 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | || || || || Sbjct 97698 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACC 97757 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| || ||||| ||||||||||| |||||||| Sbjct 97758 TCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 97804 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 97842 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 97901 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| ||| ||||| || || || ||||| || ||||| || ||||| Sbjct 97902 ATCAGGCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACGTTG 97961 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||| || || ||||| ||||||||||| || ||||| ||||||||| Sbjct 97962 TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTACCCGTCAGGGTCTTGACG 98021 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 98022 AAGATCTGCAT 98032 Score = 95.1 bits (104), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 || ||||||||| | ||||| || | |||||| || || ||||| || || || | Sbjct 95746 TCAACCGCGGAGAAGCATGACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAATCCGA 95805 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||||||||| ||||| || | | || |||||||| ||||||||||| || Sbjct 95806 GAGCGTGCGGCCGTCCTCCAGCGGCTTGTTGGCGAAGATGAGACGCTGTTGGTCGGACGG 95865 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAAT-CGCTCGATTCTA 288424 ||| | || || |||||||| ||||| |||||| | | || | | || | | || | Sbjct 95866 GATCGCCTCCTTGTCCTGGATCTTCGCCTTCACGCTGCCGATCGTGTCCGATGGCTT-GA 95924 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || | | |||||||| || | || |||||||||||||| ||||| Sbjct 95925 CCTCCAAGGGGATCGTCTGACCCATGAGGGTCTTGACGAATATTTGCAT 95973 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| | || || || ||||| | || || || |||||| Sbjct 92849 TCCTTCTGGATGTTGTAGTCGGACAAAGTTCGGCCATCTTCGAGCTGCTTGCCAGCGAAG 92908 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATT-CCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || |||||||| | | | | | | || || || || || || || || |||||||| Sbjct 92909 ATGAGACGCTGG-GTGTTTGGCGCAGTGCCCTCCTTGTCATGAATCTTTGCCTTCACGTT 92967 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| ||| | || || ||||| ||||| ||||||| |||||||| Sbjct 92968 TTCGATAGTGTCGGACGACAGGGCCTCCAGGGTGATGGTCTTGCCGGTCACGGTCTTGAC 93027 Query 288462 GAATATCTG 288470 ||| ||||| Sbjct 93028 GAAGATCTG 93036 >seq1277 Length=70460 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||||||||| ||||| || || || || || || ||| Sbjct 15097 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCAGCAAAG 15156 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||||| || || |||||||| || ||||| |||||||| Sbjct 15157 ATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTTG 15216 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || |||||||||||||||||||| || ||||||||| Sbjct 15217 TCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCGGTGAGCGTCTTGACG 15276 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 15277 AAGATCTGCAT 15287 Score = 132 bits (146), Expect = 1e-25 Identities = 172/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || ||||| || | ||| ||||| |||| ||| || || ||||| || || | Sbjct 15285 CATG-CCGCCGCGCAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAAT 15343 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||||||||| || || || || || |||||||||| ||||| || | Sbjct 15344 CCGACAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTG---GT 15400 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || || || ||||| ||||| || ||||| || || | ||| | Sbjct 15401 CTGGGGGAATACCCTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAG 15460 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| || || |||||||| |||| ||||||||||| |||||||| Sbjct 15461 ACTCGACCTCGAGGGTAATGGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 15515 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| ||||| || || || | || || || |||||| Sbjct 15833 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCCTCAAGCTGCTTGCCGGCGAAG 15892 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || ||| |||||| || || || || |||||||| ||||| ||||| Sbjct 15893 ATGAGACGTTGCTGA---TCTGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACA 15949 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || ||| || || ||||| ||||||||||| || || || |||||| Sbjct 15950 TTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTG 16009 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 16010 ACGAAGATCTGCAT 16023 >seq1532 Length=168184 Score = 84.2 bits (92), Expect = 5e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 269138 TCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGG 269197 |||| ||| | | ||||| ||||| ||| |||||| || || ||||| ||||| | Sbjct 155647 TCCCTTGTGCGCTCATCGGCATGAACGCCACGCTCATGCGCCAGTACATCGAGTTCGTTG 155706 Query 269198 CTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCG 269257 |||| ||| | | || ||||| ||||| | ||||| | ||| || |||| Sbjct 155707 CTGACCGTCTACTGGTTGCGCTCGGCGGAGAGAAGTTCTACAACGTCACGAACCCTTTCG 155766 Query 269258 CCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCG 269317 ||| ||||| | || |||||| | || || |||||||||||||| ||||| || || Sbjct 155767 ACTTCATGGACATGATCTCGCTCCAGGGCAAAACGAACTTCTTCGAGAAGCGCGTGTCCG 155826 Query 269318 ACTA 269321 |||| Sbjct 155827 ACTA 155830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179628237108618