Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1532 100 6e-16 >seq1532 Length=168184 Score = 100 bits (110), Expect = 6e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||| | |||||| | ||||||||||| ||||| || ||||| | Sbjct 155657 GCTCATCGGCATGAACGCCACGCTCATGCGCCAGTACATCGAGTTCGTTGCTGACCGTCT 155716 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 | | ||||| || ||||| | |||||| || |||||| || | ||| ||||| Sbjct 155717 ACTGGTTGCGCTCGGCGGAGAGAAGTTCTACAACGTCACGAACCCTTTCGACTTCATGGA 155776 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||| || || ||||| ||||||||||| ||||| || Sbjct 155777 CATGATCTCGCTCCAGGGCAAAACGAACTTCTTCGAGAAGCGCGT 155821 Score = 84.2 bits (92), Expect = 5e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || || ||||||||| | || || ||| | ||||||||||| ||||| || ||||| | Sbjct 152859 CTGATCGGCATGAACGCCGAGCTGATGTGCCAGTACATCGAGTTCGTCGCAGACCGGCTG 152800 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || ||||||| || ||||| ||| | | | |||||| || | ||| ||||| Sbjct 152799 CTCGTCGCGCTCGGCAGCGAGAAGCACTACCGCGCGACGAACCCGTTCGACTTCATGGAC 152740 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||| || || || ||||||||||| ||||| || Sbjct 152739 ATGATCTCGCTCACCGGCAAGACGAACTTCTTCGAGAAGCGCGT 152696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102855539844850