Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq561 122 9e-23 seq1532 100 3e-16 seq1277 93.3 4e-14 seq865 86.0 6e-12 >seq561 Length=237278 Score = 122 bits (134), Expect = 9e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| ||| | || | || | | | |||||||| || ||||||||||| Sbjct 97805 GCCGCCACGCAGACGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 97864 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||||||| || || || | |||| || ||||| || |||||||| Sbjct 97865 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGATCCGGAGG 97924 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| || ||||| ||| | || | || | ||| || | |||||||| |||||| Sbjct 97925 GATACCCTCCTTGTC-CTGAATCTTCGCCTTGACGTTG-TCGATGGTGTCGGACGACTCG 97982 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | ||| ||||| ||||| || || || || |||||||| Sbjct 97983 ACCTCGAGGGTGATCGTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 98032 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || ||||| || || || || | Sbjct 98120 GACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTTCCAGCG 98179 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| |||||||| || || || || ||||| ||| || || | | Sbjct 98180 AAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACA 98239 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| |||||| ||||| | || | || || || |||| || || Sbjct 98240 TTG-TCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTT 98298 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 98299 GACAAAGATCTGCAT 98313 >seq1532 Length=168184 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 || ||||| ||| ||| | ||||||||||| || |||||| ||||||||||||| Sbjct 152874 GCTCTGCCTGTCTCTCTGATCGGCATGAACGCCGAGCTGATGTGCCAGTACATCGAGTTC 152815 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCC 52768 || || || || ||| | || |||| |||||| | ||| ||| | ||| || || Sbjct 152814 GTCGCAGACCGGCTGCTCGTCGCGCTC-GGCAGCGAGAAGCACTACCGCGCGACGAACCC 152756 Query 52769 GTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 ||| || || ||| ||| || ||||| |||||||| ||||| ||||||||||| || Sbjct 152755 GTTCGACTTCATGGACATGATCTCGCTCACCGGCAAGACGAACTTCTTCGAGAAGCGCGT 152696 Query 52829 CGGCGAGTA 52837 |||||| Sbjct 152695 GTCCGAGTA 152687 Score = 98.7 bits (108), Expect = 1e-15 Identities = 309/469 (66%), Gaps = 16/469 (3%) Strand=Plus/Plus Query 52090 ATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCG 52149 ||||||||||| | || || |||||| | ||||||||||||||| | || |||||| Sbjct 155035 ATGACGAGCGCCACTTCGTCTCGCACGTTCTCGCGTTCTTCGCCGCCTCGGACGGCATCG 155094 Query 52150 TGAACATTAACCTCATCGAG---TACATGCAGCGGAACGTTCCGGAACTCGAGGCGCAAT 52206 | ||| || ||| ||||| | | | || || | || | | ||||| | | Sbjct 155095 TCAACGAGAATCTCGTCGAGCGGTTC-TCCAACG--AGGTCCAAGCTGCTGAGGCTCGCT 155151 Query 52207 ACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCA 52266 ||| ||| || || | | || ||| | | ||| | |||| ||| || |||| Sbjct 155152 GCTTCTATGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCA 155211 Query 52267 TTGAGCAGCTG-ATAAAAGATGAGCACGAGCGCGACACGC-TGCTGAATGCGTTCGAGCA 52324 | || || || || || || || |||||||| |||| || | |||| |||| Sbjct 155212 TCGA-CACCTACATCAAGGACCCCCAGGAGCGCGA-ACGCCTGTTCGATGCTATCGATAC 155269 Query 52325 CGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG- 52383 | | || ||| | || ||||| | ||||| || |||||| ||||| | Sbjct 155270 CATTCCTTGCATCAAGAAGAAGGCCGACTGGGCCCTGCGCTGGATCTC---CGACAAGGA 155326 Query 52384 --CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 | || | | ||||| | | ||||||||| ||||||||| | || || ||||| Sbjct 155327 GTCTGCGTTCTCTGAGCGTCTCATTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGG 155386 Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501 | || ||| ||||||| | | || | | ||| | ||||| || || || ||| Sbjct 155387 CTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCTGGGCTCACCTTCTC 155446 Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGC 52550 ||||||| |||| || ||||||||||| ||||||||||||| |||||| Sbjct 155447 CAACGAGCTGATCTCTCGCGACGAAGGCATGCACACGGACTTCGCGTGC 155495 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 |||||||| | || || |||||| ||||||||| | || || |||||| ||| ||| Sbjct 153182 GCCGAGCGGCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCCTTCGCC 153123 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 |||||||| | | || | | || | ||||| ||| |||||||| |||||| | Sbjct 153122 GCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCTTGACGTTCTCGAACGAGCTC 153063 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC 52553 || |||||||| || ||||||| ||||||||||| ||| Sbjct 153062 ATCAGCCGCGACGAGGGCATGCACACCGACTTTGCGTGTCTC 153021 Score = 89.7 bits (98), Expect = 5e-13 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 52671 GGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730 ||||||||||| | |||| || ||||||||||||| || || || ||||| |||| Sbjct 155664 GGCATGAACGCCACGCTCATGCGCCAGTACATCGAGTTCGTTGCTGACCGTCTACTGGTT 155723 Query 52731 CAGCTCGG-GCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTATGAACAACA 52788 |||||| | || |||| || ||||| | || || || || || || ||| ||| | Sbjct 155724 GCGCTCGGCGGAG-AGAAGTTCTACAACGTCACG-AACCCTTTCGACTTCATGGACATGA 155781 Query 52789 TTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 | ||||| ||||||| || ||||| ||||||||||| || Sbjct 155782 TCTCGCTCCAGGGCAAAACGAACTTCTTCGAGAAGCGCGT 155821 >seq1277 Length=70460 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||| | || || || | | Sbjct 15094 GACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCAGCA 15153 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| ||||| ||||| || || || || || ||| | || | || | Sbjct 15154 AAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATC-CTGAATCTTCGCCTTCAC 15212 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||||| ||||||||||| | ||| | ||| || || || || || | Sbjct 15213 GTTG-TCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCGGTGAGCGTCT 15271 Query 138599 TTACAAAAATCTGCATG 138615 | || || ||||||||| Sbjct 15272 TGACGAAGATCTGCATG 15288 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | |||| || | || | | | |||||||| || ||||||||||| Sbjct 15797 CCGCCACGAAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 15856 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||||| || || || |||| |||| ||||| || || || || || Sbjct 15857 AGGGTGCGCCCATCCTCAAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGATCTGGGGGG 15916 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||| | |||||| || Sbjct 15917 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTG-TCGATGGTGTCCGACGACTCAAC 15975 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| || | ||| || || || || || || || || ||||||||| || Sbjct 15976 CTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGCCT 16027 >seq865 Length=134895 Score = 86.0 bits (94), Expect = 6e-12 Identities = 108/147 (73%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 154364 CATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGAC 154423 ||| | | |||| || |||||||| |||||||| ||||||| ||||||| || || Sbjct 114739 CATGAGGTGGTAGGTCTCGATGGCACGGTCGATATCGGCGCCGTGTATGCCGACAGCCAC 114798 Query 154424 GCGCATGAGCATGTGCTGCGGACGTTCGGCGAC---TCTATTGTCAATCTTCAAGAGATA 154480 ||||||| || ||||| || || || ||||| || |||| ||||||| ||| || Sbjct 114799 TCGCATGATCAGATGCTGTGGCCGCTCAGCGACGCGTCCATTG---ATCTTCAGGAGGTA 114855 Query 154481 TCCATTTTCGAGGGTTTTGTAACCGAA 154507 | | |||||||||||| |||| || Sbjct 114856 TGAACGCTCGAGGGTTTTGAAACCAAA 114882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496251662122320