Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq561 131 2e-25 seq1277 129 6e-25 >seq561 Length=237278 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || |||||| ||| || ||||| |||||| Sbjct 98117 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTTCCA 98176 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || ||||||||||||||| ||| ||| |||| Sbjct 98177 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTG 98236 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | || |||||||||| || Sbjct 98237 ACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTC 98296 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 98297 TTGACAAAGATCTGCAT 98313 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| || || ||||| || || Sbjct 97836 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCC 97895 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||||||||| ||||| || |||||||||||| || ||| |||| Sbjct 97896 GCGAAGATCAGGCGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTG 97955 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | |||||| |||| ||| | ||| || || ||||| || Sbjct 97956 ACGTTG-TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTACCCGTCAGGGT 98014 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 98015 CTTGACGAAGATCTGCAT 98032 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| || | || | ||| ||| || || || ||||| || Sbjct 97578 CCACCGCGGAGACGCAGGACAAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 97637 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || | ||| || || ||| |||||| |||||||| ||||| || Sbjct 97638 AGCGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 97697 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| ||| ||| | |||| |||| ||||||| ||| || Sbjct 97698 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTG-TCGATCGTGTCCGAGGACTCAAC 97756 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| ||||| || || || || ||||||||| Sbjct 97757 CTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 97805 >seq1277 Length=70460 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| || || ||| | ||| || ||||| || ||| Sbjct 15599 GTAGACTCCTTCTGAATGTTGTAGTCCGACAACGTCCTGCCATCCTCGAGCTGCTTGCCA 15658 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| ||||| || ||||||||||||||| ||| ||| ||| Sbjct 15659 GCGAAGATCAAACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 15718 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||| || | | ||| || |||| ||| | || |||||||||| || Sbjct 15719 ACGTTG-TCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTGCCGGTCAACGT 15777 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 15778 CTTCACGAAGATCTGCAT 15795 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| ||| || ||||| || || Sbjct 15827 GTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCCTCAAGCTGCTTGCCG 15886 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || |||||||| || || ||||||||||||||| ||| ||| ||| Sbjct 15887 GCGAAGATGAGACGTTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 15946 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||||| ||| || |||| ||| | ||| ||||| || || || Sbjct 15947 ACATTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTC 16006 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || || || ||||||||| || Sbjct 16007 TTGACGAAGATCTGCATGCCT 16027 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| || ||||| || || | ||| || || Sbjct 15319 GTGGACTCCTTCTGGATGTTGTAATCCGACAGAGTGCGTCCGTCCTCCAACTGCTTGCCG 15378 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || || || || ||||||||||| ||| ||| |||| Sbjct 15379 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTCGCCTTG 15438 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||| | | |||||| |||| ||| | || || || |||| || Sbjct 15439 ACGTTG-TCGATCGTGTCGGAAGACTCGACCTCGAGGGTAATGGTCTTCCCCGTCAACGT 15497 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 15498 CTTGACGAAGATCTGCAT 15515 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| ||| | |||||| || || | ||| || || Sbjct 15090 CGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCC 15149 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||| | |||||||| |||||||| ||||||||||| ||| || ||| ||| Sbjct 15150 AGCAAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGAATCTTCGCCTT 15209 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | |||| |||| ||||| | ||| || || | || | ||| || ||||| || | Sbjct 15210 CACGTTG-TCGATCGTGTCGGAGGACTCCACCTCCAGCGTGATCGTCTTCCCGGTGAGCG 15268 Query 127095 TTTTTACAAAAATCTGCATG 127114 | || || || ||||||||| Sbjct 15269 TCTTGACGAAGATCTGCATG 15288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475490511351440