Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20pubescens_20[genbank_20GCA_5F001895945.1_202016-12-09] 1,731 sequences; 39,739,821 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1532 89.7 5e-13 seq1277 87.8 2e-12 seq561 87.8 2e-12 >seq1532 Length=168184 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 138377 CAAGCACGCAAAGTTGGTGTGTAAACCTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGT 138436 ||||||||| |||| ||||| | ||||||||||||||||| || |||||| || || Sbjct 155498 CAAGCACGCGAAGTCCGTGTGCATGCCTTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGT 155439 Query 138437 CAGCCCCGGCATGACGCCTTTGGTCTTGATGTAAAAGATGGCCGCGAAACTGCCCGaaaa 138496 ||||| ||||| | ||| |||||| | ||||||| |||||| ||| || || Sbjct 155438 GAGCCCAGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAA 155379 Query 138497 aaaaaCGCCTTCGACAATAGCGAAAGC 138523 || | ||| |||||| ||||| || Sbjct 155378 GAAGATGCCCTCGACAGCGGCGAAGGC 155352 >seq1277 Length=70460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || || || || || || ||||| ||||| || ||||| Sbjct 15286 ATGCCGCCGCGCAGACGAAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCC 15345 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || ||||| || || || ||| | ||||| || |||||||| | Sbjct 15346 --GACAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTG 15403 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||| || || || ||||| || || |||| || | || | |||||||||||| Sbjct 15404 GGGGAATACCCTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATCGTGTCGGAAGAC 15462 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| |||| || || || || | || || || || || ||||| Sbjct 15463 TCGACCTCGAGGGTAATGGTCTTCCCCGTCAACGTCTTGACGAAGATCTGCAT 15515 >seq561 Length=237278 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 || || || || || ||||| ||||| || || ||| | ||| | ||| || | Sbjct 98108 AGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGC 98167 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || ||||| ||| | || | || ||||||||||| |||||||| || || || || || Sbjct 98168 TGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATC 98227 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || |||| || | ||||||||| |||||||| || || || | || |||||| Sbjct 98228 TTCGCCTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCG 98287 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || || ||||| || ||||| Sbjct 98288 GTCAAGGTCTTGACAAAGATCTGCAT 98313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993419780760